ppp2r3c (ppp2r3c,LOC107682116,LOC107725453,LOC106611177)


Basic Information

Item Value
gene id ppp2r3c
gene name ppp2r3c,LOC107682116,LOC107725453,LOC106611177
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28736318 ~ 28742071 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925998.2
GTCTCGAGTCTCGACGTCATTATTGTGCGACCGACGCGGAAACGTAAACAGTCGGTTAAGTTCTGGAAGGGGACAAGTACACCTTCTGTTTATTATCGGAATCTTTTTTATAAACTTCACATTTGCAGAAATGACAAGCGACAGAAGTGCACACTGGAAAGATATTCTGAAAAGAAGACTGGCCTCGGCCAAACCTGACAGCAGGagtgaagaagagaagaaagccGAGGAGACGGAGCTCTTCACTAAATATTACACCGAATGGAAGGGAGGAGGGAGTAAAGACGGGACATTTAAACACATCCCACGCTTCTACTACAGACTTCCTGCGGAGGATGAAGTGCTGCTGCAGAAACTGCGAGAGGAGTCGAGAGCCGTGTTTCTGCAGAGGAAAAGCCGAGAGCTCCTCGACAACGAAGAGTTACAGaacCTGTGGTTTCTCCTCGATAAACATCAAGTGCCTCCTACGAGCGGTGATGAAGCCATGATCAGCTATGAGAGCTTCCTGAAGGTCGGAGAGAAAGCAGGAGAAAAGTGCAAACTGTTCTTCACTGCCAGAGTGTACGCCAAGCTGCTTCATAACGACCCGTACGGACGCATCTCCATCATGCAGTTCTTTAATTACGTCATGAGAAAAGTGTGGCTTCACCAGACGAGGATCGGGCTGAGTCTGTACGATGTCGCGGGTCAGGGCTTTCTCCGCGAGTCTGATTTGGAGAACTACATCCTGGAGCTGATCCCCACTCTGCCTCAGCTGGACGGCTTGGAGAAATCCTTCTACTCGTTTTACGTCTGTACTGCCGTGCGcaagttcttcttcttcctcgACCCTCTGCGCACGGgGAAAATTAAAATTCAGGACATCCTGGCTTGCAGTTTTCTGGATGATCTGCTTGAGCTCCGAGACGAGGAACTTTCCAAAGAGAGTCAGGAGTCCAACTGGTTCTCAGCTCCATCTGCACTCCGTGTTTACggtcagtACCTGAACCTGGATAAGGATCATAACGGGATGCTGAGTAAAGAGGAGCTGTCTCGCTACGGCACAGGAACCTTAACCAGCGTTTTTCTGGACCGTGTTTATCAGGAGTGTCTCACCTACGATGGGGAAAtggactATAAGACGTACCTGGACTTTGTCCTGGCTCTGGAGAACCGAAAGGAACCGGCAGCGCTGCAGTACATCTTCAAGCTGCTGGACATGGAGAACAGGGGCCACCTCAACGTCTTCACTCTCAACTACTTCTTCAGGgccatTCAGGAGCAGATGAAAATCCATGGACAGGAGCCTGTGTCTTTTCAGGATGTCAAGgacgAGATCTTCGACATGGTGAAGCCCAGAGACCCGTATAAGATCACGCTGCAGGATCTGGTGAACAGCGGTCAGGGCGACACGGTCACCAGCATCCTCATCGACCTCAACGGCTTCTGGACCTACGAGAACCGGGAGGTGCTGGTCACCACCGACGAGAGCAGCTCGGCCGACATGGACGACACGTGACCACAACAAACCCCGCGGAGATTAAAACCCGGAGCTGCCTAGATGCAGTCTGGGTTTGTAGGTTTAACCAATACTGGTGTCAGTCCtggaagtattggcaccctcagTACAGATGggtttaaaaagaataaaggtTATGGGGGGAAAATGCCGGCGGTTAATTAGCGTAATCTCAGACTGAGA

Function

symbol description
ppp2r3c Predicted to enable metal ion binding activity. Predicted to be involved in cytoskeleton organization; lymphocyte homeostasis; and positive regulation of B cell differentiation. Predicted to act upstream of or within regulation of dephosphorylation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in centrosome and spindle. Human ortholog(s) of this gene implicated in spermatogenic failure 36. Orthologous to human PPP2R3C (protein phosphatase 2 regulatory subunit B''gamma).

NR:

description
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925998.2 True 1681 mRNA 0.51 13 28736318 28742071

Neighbor

gene id symbol gene type direction distance location
LOC113534010 fbxo33 coding downstream 6831 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 44916 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 50067 28680699 ~ 28686251 (-)
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding downstream 212722 28481500 ~ 28523596 (-)
ccdc175 LOC108269708 coding downstream 496726 28225649 ~ 28239592 (-)
nfkbiab nfkbia coding upstream 26404 28768475 ~ 28772162 (-)
lrrc57 lrrc57,LOC107682003 coding upstream 125600 28867671 ~ 28877881 (-)
il17a/f2 LOC108269798 coding upstream 140181 28882252 ~ 28885109 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 174305 28916376 ~ 28928895 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 245288 28987359 ~ 28996157 (-)
G173255 NA non-coding downstream 19647 28715522 ~ 28716671 (-)
G173240 NA non-coding downstream 68098 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 179037 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 391551 28344439 ~ 28344767 (-)
G173025 NA non-coding downstream 512431 28181197 ~ 28223887 (-)
G173274 NA non-coding upstream 15707 28757778 ~ 28758906 (-)
G173282 NA non-coding upstream 119330 28861401 ~ 28862608 (-)
G173289 NA non-coding upstream 120837 28862908 ~ 28864167 (-)
G173268 NA non-coding upstream 123842 28865913 ~ 28866675 (-)
G173292 NA non-coding upstream 129399 28871470 ~ 28871955 (-)
G172919 NA other downstream 823774 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 825428 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1010561 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1084017 27565258 ~ 27652301 (-)
G171734 NA other downstream 3153791 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 56078 28798149 ~ 28860011 (-)
G173287 NA other upstream 94821 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 158833 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 493848 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 503898 29245969 ~ 29329076 (-)

Expression


Co-expression Network