kcnk13a (kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770)


Basic Information

Item Value
gene id kcnk13a
gene name kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27768268 ~ 27773076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926006.2
CGTGCACATTCTTGGTCGCACCTGACCAGCAAAGTTTCAGGTTTATTAAGAGACGTCCTGCGtctaacatcatcatcatcatcatcactctctctctctctctctctctctctctgcacatgGGTGCGGTGCCATCATAAAAACTTGTGCGCACCAGCATCAGCTGTAAAGCTTTAAACTCATGCGCTGAAGCTCCGTGGAGAGATCCCGCATCACCTGGCAGAAACACAACGATTTTAAGACTGCATTgcgtttgtttgttgttgttgttttgttttttttttttcctgaaatggGTTTGGCTGTgtggtaataaataaaaaccatcaTTAAAGTCTAACAGGATCATTACAGGCTTTTGCGCGCGGCTCCTGCGACTCGGGTGCGTTTACTTCTGTAAATTACGCGGTGCGTCCATGATATCTGTGAGGATGAGTCTTCTGTGGAtctgagaaatgtttttttttaatgtggttaAATGCATCTGATCGCAAACACAGGCGATGTTGAAGGAGGACACATCTGGATTCTCCTGGGAATGAAGCAGACGCGCATGGACGTGTGTAGGCGATCCTGAACGAGTGATGCCTTTTATTCTATGTGATAAATTTCATGTGTGTTTAAACACGTTAATGGACACGTGAAACCTTCCTCCTCTTTCCTAAAGTGCGTGTGATTGAAGTCTAAGGAGAAACAGGGCAGAGTTTGGCGCGCGATCCGACTCCGCTTCCTCCTACAGAATCACCTGCATGTGGTGAGAAACGCAGAACCATCACCATGATCTAATGAGGAAGCTCTGCGTGAAGATCCTGCGAAGACAAGTTCAtgatcacacacatttttactgaAAGATACACACCGACCTTGCTGTCAGGAGGACGCATTTGGACACCAGACACCATCTATTACACTTTTTATCCCGtgaaatgaatatttgattGTGAAGGAAGACCGGAAGCTCTGTCTTAAAAGGATGATTGTGGACATGCGAGGCATcttgtgatatttttatattagtgttatttttatttttatgaaatgcattttactgtaaataaagagTGAGTGTAGTGTTTAGTGGTATGCTGAGGAGGATTTTTGTTCTATGAGATACAGAGCGCATCATGACTAAAGAGGATGTGGAACTTTTCGGTGTGTATCTGGACAGGAACTCTGGCGCTTTCTCTTCTGTAGGTTAATCAAACACTTTTTAGGCAGAAGGCGGACGGCGATGTGTGAGCAGGAGCTTTGGGGTGTTTGCGCACGGACTCGGGGACAGTCTGAGATGCGGAGCCCTGTTCTGTTCTCGGTGGGAACATGATGGCATGCCGAGGGTCGTGCTGCTGTTTGGGTCTGGGCTCTGCGAGCGAGGACACGGCGCGCTTCGCCATGCTGGCGCTCCTCATCCTGGTGTACCTGGTGTGCGGCGCCGCCGTGTTCTCTGCGCTGGAGCGGCCGGAGGAGGAGCAGGCCAAGGGCCGCTGGGCGCGCAGCTTCGACCTCTTCAGCCGCAAGCACAACGTCAGCCGCAGGGAGCTCGAGGGGTTCCTCAGGGCCTACGAGGAGGCCACCGAGGCTGGCATCCGTGTGGACAGACCCAGGGCTCGCTGGGACTTCCAAGGAGCTTTCTACTTCGTGGGCACTGTTGTGTCCACTATCGGGTTTGGAATGACCACGCCGGCCACAGTGGGAGGCAAAATCTTCCTGATTTTTTATGGACTAATCGGTTGTGCAGCCACCATCCTGTTTTTCAACCTGTTCTTGGAGAGAATTATAACCGTGCTTGCGTTCGTGCTGAAGTCTTGCCACGAAGCCCAACATCGGAGGAAAGGCGTGCTACCTCACGACAGCAGGCACGAGGCGGGCCACGCGAGGCAGCACGGTGAGGACAGTCTGGCGGGATGGAAGCCGTCGGTGTACTGTGTGATGCTCATTCTCTGTGTGGCAGCCATCATTATATCATGCTGCGCCTCTGCCATGTACTCCTCGATGGAAGGCTGGGGTTATTTGGACTCTCTGTACTTTTGCTTTGTTGCGTTCAGCACTATTGGCTTCGGGGACATGGTGAGCGGCCAGCGCGCTGCGTATGACAACCAAACTCTGTACAGCCTGGGCAATTTTTTCTTCATCCTCATGGGCGCTTGTTGTATTTACTCACTCTTCAATGTCATATCCATCGTCATCAAGCAGGTTCTCAACTGGCTTCTGAAGAAGCTCGAGATACCATGCCGCCACTGCCCGGGAAGGAACCTGCGTCCAGGAAGGAACGCCATAATGCCCGGCCACTTCCGCACCCGAGTCCGGAACATCTCCATAGACACAGACGCTGTTAACGAGAGCGAAACGGACGGCCGCAGGATGTCCGGGGAGATGATCTCCATGAGAGACTTTCTGGCTGCTAATAAAGTCAACTTGGCCATCATGCAGAAACAGCTGTCCGAGACGGCCAATGGATATCCGCGACCGCCCGGCTCTGTGAACCGACACGATGAATTCTCCGGAGGGGTTGGAGCTCTGGGAATCATGAACAACAGACTAGCTGAGACAAGTGTAGACAGATAAATGTCCCCAATGACCAAATAAACCCCAAGAACTCTAAGGCCATCCCGTACCTATTAGTTCAGCTCTGTAGCTACAAGTATATTGCTGCTTATATCTTGCTCTTGCTGTCTGCTAAAGCGGTACATAAGCTCAGGTGTGGTTGAGAAGATCTCTATAAACTCTATAAACTCTTTGCTGCATCAGAAAGTTGTTTAGACATAAAATCCTGTCTTCTCTGTAAAGTAGGCTACATGATATTTGCAATCTAGTTCAGCTTATTTATCCAAATTAAGCTATTTTTATAACAGAGTGCATGCTTTGCTGAAAGTTTTATCTCAAATGGTGTCCTCTGCATACTTCAGGTGTGATTAGTGTGCTTGCAGTGAGATCCTGTACTGTTGATAACCAAATGATGTTAAACTGCCTAAAAATGAAGTGCGTAATGCTGGACATGTTTTTGCACTTGGTAAGCACAGCCTGCTCTACATACAAGAATAGGCAGAGCCAAACTCCGGTTTAAATTTTGCTGAAAGATACACACGGAGCAAGAATATCAATAAAGTGTGTATGCAATTTAGGAGCAAAACATTTAAACCAGGCGTAACATGTATAAACTCAGCATATGTTATAGAAACATTGTCATAGTCAATAGCATGGGTCAAAGCACAGCTAGAGAGGGTTGAACACGGAGGTGAATCCAGGTCAAAGTCAGAACTGGAAGTACTCCAAAAACTAAGAAAATGAGTGTTTGTTCTCCTTGGCAAGTCATCAACCAATGCATCCTCAGTTTTTGGAGAGAAtaaagaacaatttttttttttttt

Function

symbol description
kcnk13 Predicted to enable potassium ion leak channel activity. Predicted to be involved in potassium ion transmembrane transport and stabilization of membrane potential. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
potassium channel subfamily K member 13 isoform X2

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04922 KCNK13, K2P13.1; potassium channel subfamily K member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926006.2 True 3365 mRNA 0.48 2 27768268 27773076

Neighbor

gene id symbol gene type direction distance location
tdp1 tdp1,LOC102776284 coding upstream 7402 27726878 ~ 27760866 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding upstream 642363 27007934 ~ 27125905 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding upstream 761519 27004109 ~ 27006749 (+)
trnat-ugu_12 NA coding upstream 852838 26915358 ~ 26915430 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding upstream 854039 26903639 ~ 26914229 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding downstream 8392 27781468 ~ 27793212 (+)
pnoca LOC108270041 coding downstream 95164 27868240 ~ 27881903 (+)
map7a LOC108270039 coding downstream 141328 27914404 ~ 27927660 (+)
scaf8 scaf8,LOC107749595,LOC107675315,LOC107572866,LOC107728963 coding downstream 158098 27931174 ~ 27963120 (+)
tiam2a tiam2 coding downstream 189344 27962420 ~ 28056561 (+)
G172414 NA non-coding upstream 94788 27581718 ~ 27673480 (+)
G172422 foxn3,LOC107680774,LOC107751738,LOC107755777 non-coding upstream 116104 27622473 ~ 27652164 (+)
G172408 NA non-coding upstream 131907 27633932 ~ 27636361 (+)
G172405 foxn3 non-coding upstream 199629 27565306 ~ 27568639 (+)
LOC113533960 NA non-coding upstream 236905 27494902 ~ 27531363 (+)
G172719 NA non-coding downstream 21306 27794382 ~ 27799180 (+)
G172741 NA non-coding downstream 67910 27840986 ~ 27842183 (+)
G172858 NA non-coding downstream 328431 28101507 ~ 28108665 (+)
G172830 NA non-coding downstream 345986 28119062 ~ 28122832 (+)
G172873 NA non-coding downstream 375501 28148577 ~ 28191912 (+)
trnak-uuu_7 NA other upstream 42989 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 300702 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 2337339 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 2449991 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 2590371 25176374 ~ 25177897 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 254924 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1088386 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 1281157 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 1296644 29069720 ~ 29073089 (+)
nrde2 NA other downstream 1320388 29093464 ~ 29138776 (+)

Expression


Co-expression Network