fyna (fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790)


Basic Information

Item Value
gene id fyna
gene name fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25557409 ~ 25574121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926010.2
cGGGTGTCAATCACAGCCTGGTTGCCTCGCCGACGTCTGTTCCATTTCAGCGACGGGAGCAGCCCAAAGCGGTTGTTATTTTTCACCGATGGAAATAATCACGCTTTAAACCACCatcagtaacaacaacaacaacaacaagagtACAGTCTGAACCCGGTGTTGATTCTGCGCAGCAGGGAAAGAGCTCTTTGTCCTGGCCTGGTTTTCAGAGGAGCCAATCGTAGATGTTCCTACTCCATCTTTAATTGAATGGAATGCAAATACTCGGCTGTGGTGCCCCAGTGCTCGCCGCGAATCTAGATAATGGGCTGTGTACAATGTAAGGATAAAGAGGCAACCAAACtgacagatgagagagagacgagTGTTTCCCAGCACACTGGGTACCGCTATGGGGCCAACCCGACTCCCCAACACTACCCCAGCTTTGGGGTCACCGCCATTCCCAACTACAACAACTTCCACGCGCCCGTCAGTCAGGGGACTGTGACGGTGTTCGGAGGAGTGAACAGCTCGTCACACTCGGGAACGCTGCGCTCACGTGGTGGAACAGGAGTTACACTCTTTGTAGCACTTTATGATTACGAGGCAAGGACGGAAGATGATCTCAGTTTTAGGAAAGGAGAAAAATTCCAAATTCTCAACAGCACGGAAGGAGACTGGTGGGAGGCTCGCTCCCTCACTACAGGTGGAACAGGATACATACCCAGCAATTACGTGGCTCCAGTAGATTCGATCCAGGCCGAAGACTGGTACTTTGGGAAACTCGGCCGTAAGGATGCAGAAAGGCAGCTGCTGTCTAATGGAAATCCTCGGGGCACTTTTCTGATCAGGGAAAGTGAAACCACTAAAGgagCGTATTCCTTATCCATACAGGACTGGGATGACGTTAAGGGTGATCACGTGAAACACTATAAGATCCGTAAGCTTGACAATGGAGGCTACTACATCACCACCCGGGCTCAGTTTGAGACTCTGCAACAGCTTGTTCATCATTATTCTGcgaGGGCTGCGGGGCTATGCTGTCGATTGATAGTCCCCTGCCACAAAGGCATGCCTCGCCTTGCCGATCTGTCCGTCAAAACCAAAGACGTGTGGGAAATCCCGCGAGAGTCGCTTCAGCTCATCAAGCGCTTGGGGAACGGCCAGTTCGGAGAAGTCTGGATGGGTACTTGGAACGGCACCACGAAAGTGGCAGTGAAGACCTTGAAACCAGGCACCATGTCCCCTGAGTCATTCCTGGAGGAAGCTCAGATCATGAAGAAACTGAGACATGACAAGCTAGTGCAGCTATACGCTGTCGTCTCTGAAGAGCCTATTTACATCGTCACAGAATATATGGGcaaagGGAGCTTGCTGGACTTTTTAAAGGACGGTGAAGGGCGGAGCCTGAAATTGCCAAACCTTGTAGACATGGCAGCTCAGGTGGCTGCAGGCATGGCTTACATCGAGAGAATGAACTACATCCACAGAGATCTGAGATCGGCCAACATCCTCGTGGGCGACAGTTTAGTATGCAAGATCGCGGACTTTGGCCTGGCCAGGCTGATAGAGGATAATGAATACACAGCTAGACAAGGTGCCAAGTTCCCGATTAAATGGACAGCCCCCGAAGCCGCGCTCTACGGACGGTTCACCATTAAATCAGACGTGTGGTCATTTGGAATACTGCTGACGGAGCTGGTGACCAAAGGACGTGTGCCATATCCAGggaTGAATAACCGGGAGGTTTTAGAGCAGGTGGAGCGTGGATACAGGATGCCGTGCCCTCAGGACTGCCCGATCTCTCTGCACGAGCTCATGCTGCAGTGCTGGAAGCGAGATCCCGAGGAGAGACCCACGTTCGAGTACCTGCAGGCGTTTTTGGAGGACTACTTCACTGCCACGGAGCCCCAGTACCAACCAGGAGACAACCTCTAAGCCGCAAACAAACAAGAGTCTGAGAGTTAAAGCGAGTGGATTTGTGCTTTAATCTCGCAGATTATAACACAAGTCCAGTCACTTTGACTTTTAAATGCTATTAGACATTGAAAATCCACCTGGACGACTGAAAACCTCCGTAGAACTCAAGAGCCAGAGGAAAACGCATCGCTacgacacacactgacctgaacAACGATACGATGCACGTATGATGATTAAAGCTTCCAGATTCGTTGCCATTTCAATCCAGTATTCGACTTGTTACTCATCTTCCATTAAAAGGACGTGCCACATTAAATGTGTTCACTAAAGCCAAACCATATTTTGGGGACATCATGCGAGTGTTTGAAAAAGAATTAAGGATAACGGATGGCCTGTTTGTATGTAGTGTAAATATGATTGTGTTTACTTACCCACGTTTTAGgctttattactttttataatgctttttattttagtttagttgaTTTTTTGTTCGTATCCAGTCATTGCTCAGAGAAAAAGTATGAATATCGAGGCTGAAACAAGACGACTAATTCTTGAAACAGCCTCTTTTAAAACGTCCGGGACtcttttgattatttattccAGTAAAGACATACCCTCTTTGTTTAACTTTGAGAAATCCTGCAGCACATAGCTAGCTTTCCTGACACTAAACATTGTGACTTTTTCACTGAAGGAAAATTGTGTATGTGCACTGGTGACTCTGCTCAGCTTTATTATTTGCTCCTGCTTTTAGCAAAAGCTCAGTgtctccatttttcttttgtttgtttctcttgcTAGTGCATTTTCTATTTAGTCACTTTGGATTAACGATAGAAGAAGTATGCATCGATATAGTAATCAGGCTGTGTGGGCATTATGCTTGACTATACCTGCATCTCTCTCTAGCGAAgatgatcaaataaaataaatggctAACATCATTATTGTTGTAAGAAGCATAAAAGCAAATCATTTAAATGCATTACAATGTGCTATGATTTAACATAACtaagtagaaaaaaataacattaactcCACTGAGCTTGTCTCGCTTCTCTCTGGCCCTGATTTCTGTCCCTGATATAAAAACGATTTCAAAACGTCATGTCTGGACCGTATTTAACCTCAATCGATATGTTAAAATGTCACAGCCTGTGTCTATCAGGCAGAATTAGCAGGGCCATTTTCACCTCGTTTCCATTCCAGCTTTCACTTGAATATCTAGTGAAGGTTTTTCTATAGAATAGTGCGCACTATAGTAAGCCGTATGAACACGGACTCCGACTCCGACCTCATGATTTTCACtcgtttctctcttttttttttttttttttttttttttttttaagtcatccATTCGGATTAATTCATagatattgtgtttttatttaattgttttgtttcatttatgcACAAACATTTGTAGAATAAAGACTCATACCCAAGCCCA

Function

symbol description
fyna Enables protein kinase activity. Acts upstream of or within several processes, including adherens junction maintenance; gastrulation; and protein autophosphorylation. Located in cytosol and nucleus. Is expressed in central nervous system; olfactory placode; peripheral olfactory organ; and retina. Human ortholog(s) of this gene implicated in Alzheimer's disease and schizophrenia. Orthologous to human FYN (FYN proto-oncogene, Src family tyrosine kinase).

NR:

description
PREDICTED: tyrosine-protein kinase fyna

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K05703 FYN; tyrosine-protein kinase Fyn

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926010.2 True 3367 mRNA 0.45 13 25557409 25574121

Neighbor

gene id symbol gene type direction distance location
LOC113534087 LOC108270379 coding downstream 1846 25534732 ~ 25555563 (-)
LOC117598273 NA coding downstream 22749 25533476 ~ 25534660 (-)
LOC117598272 LOC108270379 coding downstream 23933 25521364 ~ 25533476 (-)
zgc:85722 LOC108270090,LOC108443409 coding downstream 88840 25431323 ~ 25468569 (-)
ros1 NA coding downstream 138946 25398090 ~ 25418463 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding upstream 13367 25587488 ~ 25592743 (-)
si:ch211-266g18.9 LOC108270005 coding upstream 45895 25620016 ~ 25633883 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding upstream 60606 25634727 ~ 25640221 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding upstream 77687 25651808 ~ 25660655 (-)
manea LOC108270006 coding upstream 90217 25664338 ~ 25669975 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 47789 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 87335 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 167538 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 265471 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 267907 25287152 ~ 25289502 (-)
G171755 NA non-coding upstream 199383 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 403675 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 484124 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 1021160 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1198011 26772132 ~ 26773050 (-)
G171569 NA other downstream 298047 25258839 ~ 25259362 (-)
G171256 NA other downstream 631185 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1013330 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2377898 23148743 ~ 23179511 (-)
G170435 NA other downstream 2693642 22855494 ~ 22863767 (-)
G171734 NA other upstream 4818 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1991137 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2097502 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2325361 27899482 ~ 27910890 (-)
G172919 NA other upstream 2338116 27912237 ~ 27912544 (-)

Expression


Co-expression Network