si:dkey-87k14.1 (flrt2,LOC107583684,LOC107750877)


Basic Information

Item Value
gene id si:dkey-87k14.1
gene name flrt2,LOC107583684,LOC107750877
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26213268 ~ 26218168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926019.2
cactctcacacacacacacactcactcatacaccccgcacgcacgcacgcacacacgcgcgcgcgcaggAACGGAGAGCCGGACGCGTTTCGGCACTATGCTGCCGCTGCAAACCCCGAGCCTTACACCAAAGGAGTTTCACCATCCCGGAGAGCAACATCACACAGCTGCTGACTTTTTTACACCCAAACCGTGGATAAAACTAAATGATGCACGATTTCCGAAGATGGGCAATCTTAGGAGAGCGCACACTGCACGCTGCACGCGCCAAGACTAAAGACTTAACCCCAGATCTAATTAAATCCACTTCTGCTGTTCCCAGAGTTCCACAGCGAGATCCTAAAACTCCAACCACCAAATGCGCGCGGAAATCTTCACCATAATCTCATCTTAAACATTTCCCTGGGACTCGGAGATTGTGGATAAAacccgctgtgtgtgtgtgtgtgcgtgtgtgtttgcatatatgtgtgtgtgtttgcatatgtgtgtgtctgtgtatgtgtgtgtttattccatCTACGGGATCTTAATTTCTGGAGAAAACACCCTGGAGCTATAGGACAGGTTTAAAATCCAACATCCATGCAgGGAAATGGACCCAAATGCCCCATGCGAGCGAAGCTGTGTCATTCAGAGAGCAGCCGGCTGTGACCAGAGAGGAGCTTGTCACTGATAAAACTGCCAAACGTGCTGTTTTGGTCCACGTACTTAAAGCGGCCCTCCCTGGCCTCCGAGTGAAAATGTGATGAGCTTGGCTATCAGTCTCAACCCAAGCATGGATGGAGGCAAGCAAGGGAGGCACACAGGCTAATGAGACCATTGGTCTTGTGTTGGGGGGGCTTAGGAGAGCCAATTACAGGAGGATTATCCACTTTTCTCCAGCGTAGCTCCACCGTGGAAAGCTTCAAGAGCTGTTAAAAACTTCAACCTGGTGGAATTTActcctttttttattgctttgtaCTTGCAGCCCCTCTgagctgtttgtgttttctcccCACCAAAAATGGAGATACAGGTACGAATATGGAATAAAGATGTGATGATCTTTATTAGACCATGGATACCGATCCTACTAGGCCTTCACATGCAGTTCTCCTGGGCCACGACTTGCCCAGATGAGTGCCGCTGTGACAGAACCTTTGTGTACTGCAACGAAAGGAgcctaacatcagtgcctctGGGGATAGGTGAGGGTTACAAAACCCTCTACCTCCACAACAACCAAATCAACAATGCTGGATTTCCAGCAGAGCTACACAACGTTGCTTCGGTAGAGACGGTGTATCTCTACGGCAACCAGTTGGACGAATTCCCAGTCAACCTGCCCAAAAACACGCGGGTGCTCCACCTGCAGGAGAACAACATTCAGACAGTGTCACGTGCGGCGCTGGCCCAGCTCCTGCGCCTTGAGGAGCTCTACCTGGATGACAACTCTATCTCCACAGTGGGTGTGGAGGAAGGGGCATTCAGGGAAGCCATCAGTCTCAAAATCCTCTTCCTAACCAAGAATCATCTGAGCAGCGTGCCCGTTGGACTCCCTGAAGAGCTCAAGGAGCTGCGTTTGGATGAAAACCGGATAGCTCTCATCAGTGATGATGCCTTTGAGAATGTAACAGGGCTTGAGCGCCTCCTTCTGGATGGAAACCTCCTGACAGATGAAGGCTTGGCCCCAGGAGCATTCCAGGGTTTGGTTAACCTTAAAACCCTGTCCATGGCACGCAATTCCCTGATGGTCCCTCCTCCTAATCTGCCCACCCAGTGTTTGGTCAAGCTCAGCTTGCAGGATAATCTGATGAATGAGATCCCTTTGACGGCTTTCCATGGCCTGCACCGCCTCGAGAGACTGGATATTTCCAACAACCAGCTGCAGACTCTCACACAGGGGGTCTTTGATGGTCTCCTTAGCCTGAGACAGCTCACTGTTCGAAACAATCTTTGGCTCTGTGACTGCAACATTAAATGGGTCATATTGTGGCTAAAGTCCTTGCCGGCCACGCTGAACGTCCGTGGCTTCATGTGCCAGAAGCCTGAGAGTGTGCGTGGTATGGTAATCAGAGAGCTAAATTTGGAGTTGATCCAGTGCCCCAGCAGTACAGCCATAGTGCCACGATCAACACAACAGCCGACACACTCCTCTTTGCCTACTGCTGAGTCAGCCACTGAAACAGGCTTCTCAACCCCAAACTACGTCCATACTCCCAGCTTTGCACCCGCACCATCTGCCCTGCCAACCGAGCACGGAGATAAAGAACTGAGGACAGATGTCCCTGAGGATCCTGTGCAGGAATCGCTTCGTGTTTCCTTCATTGTCTTAAACAGCACGTGCGTCCAGGTGAACTGGATATCTACCTTCACTGTCACAGCGTACAAGGTGACTTGGGTCAAGATGGGTCACAGTTTGATAGGCGACCCTATGCAGGAGACTATGGTTGAAGGTGAGCAACAGAGAATACACCTGACCAACCTGGATCCCAAATCCATCTACCGAATTTGCGTGGATCCGCTGGATGCTTTCAACAATTATCACACAGGAGAAGACACGATTTGCTCGGAGGTGATGACCAAGCCGGCCTCCTATGACTTGGACGAGAAGGCCGAGCAGGCGAGCCAACAGGACCTCGGCTCATCTCTGCTGCTGGCCGGCCTGATCGGAGGGGCTGTGCTTGTCGTCCTGGTGCTGCTGCTTAGCATATTCTGCTGGCACATGCACAAGAAGGGACGGTCGTCCTCATCCAAATGGAAATATAACCGAGGGAGGAGGAAAGACGATTACTGTGAAGCAGGCACAAAAAAGGATAACTCCATCCTGGAGATGACCGAGACTAGCTTTCAGATAGTTTCTTTGAACAACCAACAGCTCCTTAAAGGGGACTACCGAATTCAGCCCATTTACACTCCTAATGGAGGCCTTGGCTACAGAGACTGCCACGTGGCCAACAACAGTACAAGCTACAGCAAGAATAGCGTTCCAGAGTCTAACCCTTGCCATACATGATGGTTTTCGAAAGGTATTAATCCTTTGTATTAAAAATTCGACTTAAATACgctgtacagtatatatttcaAAGATGAACTGTAAATGCTGTAATTTATACTCTTATCAGTGATATCGCCTTCTTTTGTATTCCGagtaaaatgcaaaaacaatttA

Function

symbol description
flrt2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neurons; pronephros; and solid lens vesicle. Orthologous to human FLRT2 (fibronectin leucine rich transmembrane protein 2).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926019.2 True 3157 mRNA 0.50 2 26213268 26218168

Neighbor

gene id symbol gene type direction distance location
gsc gsc,LOC102791948,LOC101076325,LOC107578966 coding upstream 302962 25904043 ~ 25910306 (+)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 coding upstream 354845 25829865 ~ 25858423 (+)
clmn clmn,LOC107583621 coding upstream 385233 25794575 ~ 25828035 (+)
syne3 syne3 coding upstream 440402 25741075 ~ 25772866 (+)
gabrr2a gabrr2a,LOC108269496,LOC108435431,LOC107693119,LOC107755784,LOC107680781 coding upstream 474598 25719525 ~ 25738670 (+)
LOC113534080 NA coding downstream 88909 26307077 ~ 26312507 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding downstream 105231 26323399 ~ 26334056 (+)
LOC113533735 amhr2 coding downstream 116654 26334822 ~ 26348340 (+)
ak7b LOC108269780 coding downstream 131694 26349862 ~ 26360091 (+)
vrk1 vrk1 coding downstream 187222 26405390 ~ 26419207 (+)
G171684 NA non-coding upstream 434536 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 620519 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 690579 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 823763 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 824102 25388772 ~ 25389166 (+)
LOC117598331 NA non-coding downstream 407772 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 571355 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 584888 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 648949 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 749164 26967332 ~ 26967536 (+)
LOC113534148 NA other upstream 782339 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 894991 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1035371 25176374 ~ 25177897 (+)
G171329 NA other upstream 1205502 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1212649 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 938175 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 1507039 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1809832 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2643294 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2836065 29054233 ~ 29138878 (+)

Expression


Co-expression Network