rtraf (c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811)


Basic Information

Item Value
gene id rtraf
gene name c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25047670 ~ 25055250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926027.2
CTCATTAATGTGGCTCGCTTCACACTGCTAGCTGAGCAATTCCTACGTAGCCAcatattacagctttatctgGAGTGTTATAAATCTTTTCCGATATTGTTTGGTGGGAAATAAAATGTTCCGTAGGAAGCTTACGGCTTTAGATTATCATAATCCTTCGGGTTTTGACTGCACAGATGAAACCGAGTTCAGAAATTTCATCGTTTGGCTGGAGGATCAGAAAATCAGACATTATAAAATCGAGGATCGTGGAAACCTCAGGAACATCTCGAGCTCTGAGTGGCCAAAGTCCTTTgaaaagtATCTACGAGACGTGAGCTGCCCATTCGGTGTTCAGGAAAGGTGCGAGGCCATCGACTGGCTGCTGGGTCTCGCAGTTCGGTTTGAATACGGTGACaatgTGGAGAAATACAGAAACTGCACACCTGCAGCGGAGGTGAACAACGCAACACAAAAACCAGCCGACCCTCTCATTAACCTGGACAGCAACAATCCTGATTTTAAGGCTGGAGTCACGGCCCTGGCAAACCTTCTCAAAATTCAGAGACACGATGACTATCTGGTGATGCTCAAGGCCATTAGGATCCTCGTCCAAGAACGCTTGACTCCTGACGCCATTTCAAAAGCCAGCAAGGCAAAAGAGGGTTTGCCAGTTGCTTTGGACAAGCACATCCTAGGCTTTGACACCGGCGACGCCACTCTGAACGAAGCGGCTCGTATCCTCCGGCTCCTGCACATCGAGGAGCTGCGCGAGCTCCAGACAAGAATCAACGAGGCCATCGTGGCTGTGCAGGCCATCATCGCCGACCCAAAGACCGATCACCGTCTCGGCAAAGTGGGCAGATGATCACACACTCCGTGGACGGCGTGAAATGGAACAGGACGATTGGTGTTTAATTGTGCCATGATTGTGGAGAAATGAATTTGAAAACGAAGATTTTTGCGTTGCCCTTTAGACCTAAAAAGCTCAGAAATGTTTTTGGACATTTGGAGAATATATGAGTTGCACCATCAAACAGTACATTAACAGTTTTTTTCACTTATACAAAGCACTGTGCGTTTCCTGTAACAGATCTGTTTCGTTGGAAATGATGAAGTGGCTTTTGgacagcaagtttttttttttttttgtgggggtgtgtttgtttgagacttgctttttctttcaatgaaaaaaagataaaactgcAAAGGCATGTGTGCATAcgtataaattacattaatgcAAAGA

Function

NR:

description
UPF0568 protein C14orf166 homolog isoform X1

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0072669 tRNA-splicing ligase complex cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG:

id description
K15433 CGI99, CLE7, RLLM1; RLL motif containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926027.2 True 1231 mRNA 0.45 8 25047670 25055250

Neighbor

gene id symbol gene type direction distance location
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding upstream 186638 24783003 ~ 24861032 (+)
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding upstream 280254 24629095 ~ 24767416 (+)
ptafr ptafr coding upstream 486392 24554583 ~ 24561278 (+)
trnar-acg_3 NA coding upstream 618008 24429590 ~ 24429662 (+)
trnah-gug_13 NA coding upstream 618195 24429404 ~ 24429475 (+)
ptger2a LOC108269911 coding downstream 59527 25114777 ~ 25132890 (+)
LOC117598271 LOC108191637 coding downstream 116295 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 151586 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 326462 25381712 ~ 25388660 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 414208 25469458 ~ 25489162 (+)
G171215 NA non-coding upstream 247612 24759612 ~ 24800058 (+)
G171121 NA non-coding upstream 556461 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 597603 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 729604 24317534 ~ 24318066 (+)
G171019 NA non-coding upstream 737704 24309630 ~ 24309966 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding downstream 17496 25072746 ~ 25076475 (+)
G171413 NA non-coding downstream 79350 25134600 ~ 25134885 (+)
G171430 LOC108191637 non-coding downstream 120576 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 133915 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 216599 25271849 ~ 25279677 (+)
G171329 NA other upstream 39904 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 47051 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 564816 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 2025275 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 3227611 21819281 ~ 21820059 (+)
LOC117598238 LOC108191637 other downstream 121124 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 203561 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 371641 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 2101093 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2669957 27725207 ~ 27725279 (+)

Expression


Co-expression Network