LOC113533735 (amhr2)


Basic Information

Item Value
gene id LOC113533735
gene name amhr2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26334822 ~ 26348340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926028.2
TCTCTCTTCTGCGGCTCAAGGCATCTGTGTAAATCATTCGTCTGTTGCTCCCATGAAGAATGCGACTATCAATGAGCGTTGTTTTCATAGCATTCATAGCTTGGTTGTTGAAATACATCCCTGCACCTGCAGTCACTACAGAGAGAAGATGCGTGTTCTTGGCTAGTCCACAAAACACTGAACGGACCCAGAAAGCAGGGAACATAAATGGACGCAGTCAGGACTGTGCCAGAACTGACTGCTGCATGGGTTACTTCCGGCTGGAGAGTGGAAAACCCAAGCCTGTCCTCTTAGGTTGTAGTATAATCCATACCTCCTGCCCAAACTTGCTATGCCATGCATCAGTACATCTTCAGAACTACATTGGGTGTGCGTGCAGCTCAGATTTCTGCAATATGAACATCACCTGGAATCAGCAAGCCAAGCAAAATGAATACAAGCAACCTCCGTATATCTCAGATCTGCTGAGTGCCAACATCTTCATTATTCCTGCTGGAGCTCTGATTCTGTTATTTTTCCTCATAACTGCACTGAAGTGGAAACTTCTTAAATGCTGCAGGCCTGTAACACCTCCAAACACACATGACATGTTAGAGGTAGCTAATATTGACCTGGACAAACACTTGGAGATGGAAAAAGTAGTTGCTTGTGGCCATTTCGCAAGTGTGTGGCAGGGAACTTTCCACGGATCATCGGTGGCCTTGAAAGTGTTTCCTACAGCACTACAACAAAAGTTCACTAAAGAGAAAGATGTGTACAAGCTGCCTTTAATGATGCATTCTGGGATTGTAAGGTTTCTTGGAGATGGAAAAATAGGGCAAGAGTTTGTGCTTGTTTTGGAACTGGCAACCCAAggtTCTTTGAATGCATTTCTGTCTAGAACGGTGAGTGACTGGGCATGTACGCTAAAACTAGCTCAAACCCTATCGCAAGGATTGGCCTACCTGCACACTGACTTAAAAATGAACGGAGTCTATAAGCCAGCGGTGGCTCATTGTGATCTCAGCAGCAGTAATGTTCTGGTGAGAGCTGATGGTTCCTGCGCTCTGTGTGACTTTGGATGCTCAACAGTGCTACAGTGCCAAGCATTGCAGGGTTATTCTGGCATAGTAGAGGGCAGAATTCAGATGGGGACTCTGCAGTACATGTCACCTGAGATCTTGGAGGGATGTGTTAATCTGAGCAGCGGTCGCTGTTTGCTTCAGGGAGATGTGTATTCCTTCGGACTACTGCTTTGGGAGTTGCTGATGCGTTGCTCTGATCTCTGCAAAGATTCTCCTGTTCCAGAACATATGTTGCCTTATGAGATGGAACTGGGACGCAGTCCGTCCCTTGAAGATCTTCTTACTTTCGTGTTGGAGAAAAGATTACGTCCAACTATACCTCATCTGTGGACCAGAGTCTCCCAGGGATTGATTCTCCATGAGCTCCTTGAAGATTGCTGGGATCATGATGCAGATGCAAGACTCACAGCAGAATGTGCAGCCAATAGATTAGCTTCTTTAACACTCTGATCTTGCCTCGTAAAGACCGAAGTCCGTGTGCAAATTTAACGTTGCTGAACATTATATTAGCTGATGAACCGATATTAGTGAGTGTGAAGTGCTCACATTTCTGTGAGCATGTTTGCTGTGTGGTGAAATATTATAGCATTTATGACAAGAGTTACTTAAGAAAGAATGGTGTAAAGAAGATAAAAAGAAGATTGTCTTCGTTGTATGTATTTCAGTATGCAAcctttcatattaatgagaaatccaacatagaaTTAATGTAGAATTTGTTGGATTCAAATttccagaatgcactgcagctATGCAACACAGTTTCTGTCAGCTTtgacacattttacacactttttcgTGCTGCTTTGCTAGATGTTCTTACATTACTGGAGCTACTAGGTTAGCTGTGCCTGCTGTCTTTACTCTGCGACTTTCTTCCGATTAATATCAAGGTCACGGTTCAGACACACACCACGCTCCATGTCCAGTGTAACGTGATCTTCATGGTGTAACATCTCTGCTTgcagaataaagaaataaccCTCTTTGA
>XM_026926029.2
TCTCTCTTCTGCGGCTCAAGGCATCTGTGTAAATCATTCGTCTGTTGCTCCCATGAAGAATGCGACTATCAATGAGCGTTGTTTTCATAGCATTCATAGCTTGGTTGTTGAAATACATCCCTGCACCTGCAGTCACTACAGAGAGAAGATGCGTGTTCTTGGCTAGTCCACAAAACACTGAACGGACCCAGAAAGCAGGGAACATAAATGGACGCAGTCAGGACTGTGCCAGAACTGACTGCTGCATGGGTTACTTCCGGCTGGAGAGTGGAAAACCCAAGCCTGTCCTCTTAGGTTGTAGTATAATCCATACCTCCTGCCCAAACTTGCTATGCCATGCATCAGTACATCTTCAGAACTACATTGGGTGTGCGTGCAGCTCAGATTTCTGCAATATGAACATCACCTGGAATCAGCAAGCCAAGCAAAATGAATACAAGCAACCTCCGTATATCTCAGATCTGCTGAGTGCCAACATCTTCATTATTCCTGCTGGAGCTCTGATTCTGTTATTTTTCCTCATAACTGCACTGAAGTGGAAACTTCTTAAATGCTGCAGGCCTGTAACACCTCCAAACACACATGACATGTTAGAGGTAGCTAATATTGACCTGGACAAACACTTGGAGATGGAAAAAGTAGTTGCTTGTGGCCATTTCGCAAGTGTGTGGCAGGGAACTTTCCACGGATCATCGGTGGCCTTGAAAGTGTTTCCTACAGCACTACAACAAAAGTTCACTAAAGAGAAAGATGTGTACAAGCTGCCTTTAATGATGCATTCTGGGATTGTAAGGTTTCTTGGAGATGGAAAAATAGGGCAAGAGTTTGTGCTTGTTTTGGAACTGGCAACCCAAggtTCTTTGAATGCATTTCTGTCTAGAACGGTGAGTGACTGGGCATGTACGCTAAAACTAGCTCAAACCCTATCGCAAGGATTGGCCTACCTGCACACTGACTTAAAAATGAACGGAGTCTATAAGCCAGCGGTGGCTCATTGTGATCTCAGCAGCAGTAATGTTCTGGTGAGAGCTGATGGTTCCTGCGCTCTGTGTGACTTTGGATGCTCAACAGTGCTACAGTGCCAAGCATTGCAGGGTTATTCTGGCATAGTAGAGGGCAGAATTCAGATGGGGACTCTGCAGTACATGTCACCTGAGATCTTGGAGGGATGTGTTAATCTGAGCAGCGGTCGCTGTTTGCTTCAGGGAGATGTGTATTCCTTCGGACTACTGCTTTGGGAGTTGCTGATGCGTTGCTCTGATCTCTGCAAAGAACATATGTTGCCTTATGAGATGGAACTGGGACGCAGTCCGTCCCTTGAAGATCTTCTTACTTTCGTGTTGGAGAAAAGATTACGTCCAACTATACCTCATCTGTGGACCAGAGTCTCCCAGGGATTGATTCTCCATGAGCTCCTTGAAGATTGCTGGGATCATGATGCAGATGCAAGACTCACAGCAGAATGTGCAGCCAATAGATTAGCTTCTTTAACACTCTGATCTTGCCTCGTAAAGACCGAAGTCCGTGTGCAAATTTAACGTTGCTGAACATTATATTAGCTGATGAACCGATATTAGTGAGTGTGAAGTGCTCACATTTCTGTGAGCATGTTTGCTGTGTGGTGAAATATTATAGCATTTATGACAAGAGTTACTTAAGAAAGAATGGTGTAAAGAAGATAAAAAGAAGATTGTCTTCGTTGTATGTATTTCAGTATGCAAcctttcatattaatgagaaatccaacatagaaTTAATGTAGAATTTGTTGGATTCAAATttccagaatgcactgcagctATGCAACACAGTTTCTGTCAGCTTtgacacattttacacactttttcgTGCTGCTTTGCTAGATGTTCTTACATTACTGGAGCTACTAGGTTAGCTGTGCCTGCTGTCTTTACTCTGCGACTTTCTTCCGATTAATATCAAGGTCACGGTTCAGACACACACCACGCTCCATGTCCAGTGTAACGTGATCTTCATGGTGTAACATCTCTGCTTgcagaataaagaaataaccCTCTTTGA

Function

symbol description
amhr2 Enables anti-Mullerian hormone receptor activity and hormone binding activity. Involved in anti-Mullerian hormone signaling pathway. Predicted to be integral component of plasma membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Implicated in persistent Mullerian duct syndrome. Biomarker of dysgerminoma and leiomyosarcoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926028.2 True 2055 mRNA 0.44 11 26334822 26348340
XM_026926029.2 False 2040 mRNA 0.44 11 26334822 26348340

Neighbor

gene id symbol gene type direction distance location
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 766 26323399 ~ 26334056 (+)
LOC113534080 NA coding upstream 22315 26307077 ~ 26312507 (+)
si:dkey-87k14.1 flrt2,LOC107583684,LOC107750877 coding upstream 116654 26213268 ~ 26218168 (+)
gsc gsc,LOC102791948,LOC101076325,LOC107578966 coding upstream 424516 25904043 ~ 25910306 (+)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 coding upstream 476399 25829865 ~ 25858423 (+)
ak7b LOC108269780 coding downstream 1522 26349862 ~ 26360091 (+)
vrk1 vrk1 coding downstream 57050 26405390 ~ 26419207 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 555299 26903639 ~ 26914229 (+)
trnat-ugu_12 NA coding downstream 567018 26915358 ~ 26915430 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 655769 27004109 ~ 27006749 (+)
G171684 NA non-coding upstream 556090 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 742073 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 812133 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 945317 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 945656 25388772 ~ 25389166 (+)
LOC117598331 NA non-coding downstream 277600 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 441183 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 454716 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 518777 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 618992 26967332 ~ 26967536 (+)
LOC113534148 NA other upstream 903893 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1016545 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1156925 25176374 ~ 25177897 (+)
G171329 NA other upstream 1327056 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1334203 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 808003 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 1376867 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1679660 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2513122 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2705893 29054233 ~ 29138878 (+)

Expression


Co-expression Network