wdhd1 (wdhd1,LOC107583614)


Basic Information

Item Value
gene id wdhd1
gene name wdhd1,LOC107583614
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25336546 ~ 25361861 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926034.2
ATATTATTCGAAGCTTATTTCATTCATCCCGTTGGAAATTTTCTTCCGGCATCACAGGTGACGCGTTAATGGGTGGAGCCAAACAGCATGTTCTGACCAATAGAAGAGTGAGAAAGGTAGAAATCCACGCCTTCTTTTATACGTCATCATTTCGGCGCGGGAGACAGGAGTTGAAAGCCGTGTTTAAGAGAATTGCCGCCAATAACGAGGAGGACCTACGATGCCCTGTGAGAGGAAGCCGATGCGCTACGGCCACTCAGAGGGCCACACGGACGTCTGCTTTGACGAGCACAGCAAATGCATTGTTACGTGTGGAAGCGACGGAGACGTGCGCATATGGGAAAGTCTAGACGACGACGATCCTAAATCCATAAATGTCGGCGAGAAGGCCTACTCTGTAGCTTTGAGAGGTGGGAAATTAGTCACAGCCGTTTCCAACAACACTGTTCAGATCCACACGTTCCCCGATGGAGATCCCGATGGAATACTCACCCGTTTCACCACCAACGCAAACCACGTCGCCTTCAACTCCAGCGGCACACGAGTCGCTGCTGCCTCCAGTGACTTCCTGATAAAGGTGATTGAGGTGATGGACAGCAGTCAGCAGAAGACTCTACGTGGTCACGATGCACCTGTTCTCagtgtgacctttgaccccagcGATGAGTATGTTGCCTCCTCCAGTTGTGACGGCTCGGTGGCCGTGTGGTCTATAGAGGAGCAGACTCAAGTGGCGAACTGGAAGGTGCTGCAGAAGTCGAGTGACGTGAGCAACGCTAAGTCTCTGTGCAGACTCGCATGGCAAGGATCTGGGAAGctgcttGCAGTTCCAGTGGACACCACAGTACATCTGTATGAGAGAGACTCCTGGACTCATGTTGGCACTCTATCTGATGACCTTCTCACTCAGGTCGTTAACGTGGTGGTTTGGTCGCCGTGTGGGAAGTTTCTGGCAGCCGGAACAGTGGGAGGAACTCTCTCCGTTTGGGACGTTGAAGCGAAGCTGTGCATTGAGAGGCAGAAGCATGAGAAAGGCTACACGGTGTGCGGCATGGCCTGGCATCCCTCCGGAGGACAGATCGCTTACACGGACACCGAGGGCTGCCTGGGCCTGCTGGATGGCGTGTGTGcatcttcctcatcctcctcttcctcatcctcctcttccatTACCACGAAGAACACCACGcaGGCTGCTGAGAGTAAAGAGCAGAACGGTTATGACGATCTGTTTGATGAGGATGACGGCGGCCTGCTAGATGAATGTCGGAGCGTCTCAGCGGGTGAAGAGGACGACGAGGTCCTCATGCCTGCCGCTCGCAAACCGCGCAGCAGAGGGAACGTCCTGGACGATGACGAGAACTCTAGAGACACCGGCTCGGTGAAGGTGGATCATTTAGCTGAGGATGATGGAGAGAGCGGCGTTTTGCCCGCTCCGGCGCCCCCCGTCGCAGCAGCGCCACGCCCGGTTTACGAGGGTCCCATGCCCACTGCGCCTCAGAGAGCCTTCCAACCCGGCTCCACTCCGGCACACCTCATGCACCGTTTCATGgtTTGGAACTCGGTGGGTATTGTGCGCAGCTACAACGATGAACAGGATAACGCCATCGATGTGGAGTTCCACGACACTGCCGTCCATCACGCCATGCACCTCACGAACACACTGGAGCACAGCATGGCCGATCTATCCCAGGAGGCTGTTCTGCTCGCCTGCGAAGGCACCGATGAACTCGCTAGcaagctgcaatgcctGCACTTCTCCACATGGGACACGAATAAGGAGTGGATAGTGGACCTGCCGAAAGGCGAGGACGTGAGGACGCTGTGTTTGGGACAAGGCTGGGCGGCGGCGGCCACCAGTGCCATGCTGGTGCGTCTCTTCTCCATCGGCGGCGTTCAGAGAGAGATTTTCAGCCTCCCGGGCCCTGTAGTGTGCATGGCTGGACACGGGGAGCAGCTTCTTATAGTCTATCACAGAGGGACTGGGTTTGACGGCGACCAGGCTCTCGGGGTGCAGCTTCTGCAGCTCGGCCAAAAAAGGAAGCAGATCATCCACGGTGAACCTCTGCCTCTTTCCCGCAAGTCCCACCTGACATGGATGGGCTTCAGTGCAGAAGGAACACCATGTGCCGTGGACTCGGAGGGCGTGGTGCGCATGCTGAATCGCTCTCTGGGAAACACATGGACTCCTGTGTGTAACACCAGAGACAACTGCAAGAGCAGGTCGGATCATTACTGGGTGGTCGGAATCCACGAGAATCCCCAGCAGCTCAGGTGCATTCCCTGTAAAGGATCCGTTTTTCCCCCGACTCTTCCTCGTCCTGCTGTGGCCATCCTGCCCTTCAAACTGCCCTTCTGCCAGACCAGCACGGAGAAAGGCCAGATGGAGGAGCAGTACTGGCGCTCGGTGCTCTTCCATAATCACTTTGGCTTCCTGTCGTCCAGCGGTTATGAGACGGACGTGGAGACTCAGAGGCAGCAGGAGAAGGAGCAGCAGGAGCTGTTGATGAAGATGTTCGCGCTGTCGTGTAAGCTGGAGCGCGAGTTCCGCTGTGTCGAGTTGGCTGAGATGATGACCCAGAGTGTGGTGACGCTCGCCATCCGCTACGCTTCACGCTCCAGGCGCATGCTTCTTGCTCAGAGGCTCAACGAGCTCGCTCTGGAGAAGGCCAGTCAGCTACAGGAGGAGGCGGAGCCAGAGGAGGAAGCAGCCTATCACAGCCAGGCACAAAATGCAAGATTTAGTCAAGCCAGTCGAGTCGCCAGACACTCGAGCAGCAGAGCGGCACAGGAAGACTGCGATGAAGAAGAGCAGGAAGACGAGGAAGAGCCGATGGAAGCAGAGGAAGAACCGGAAAGCAAAAAGTCACGTGTGAATCCGTTCAGTAAAGGCACAAAATCACCTGAAAAACCTTCCATCAAACCAGTCAGCAAAGAAGGCCGTGTGAACCCCTTTAAGGTCAGTGGATCAGGAAAGCCGTCCACGTCTTCATCACCACAGCCCAGAGCTACTAACGTTCTGGACAACATGACGGCAtccaacaggaaacacacatcGTCCAGTAAAGCTCCAGTGCTAAAGCCTCTGGCACCAAAACCACGCTCCAAGgctcaGGCTACATTGCTGCAGATGAGCACGTCTAAAATAGCTTCTAAGAAGCCGGAGGAGAAGGAGATGGAGAAACCGAGAGCAGAAAAACCTGAGAAACCAGCAGCAGCACCTGGAGACAACGTGGAGAACACCAGACCAAAGACCGGGTTCCAGTTGTGGCTCGAGGAGAACAGGAAGAGCATTCTCGCTGACAAGCCAGACCTGGAGGAGATGGACATCATTAAAGAGGCCATGAGCCGCTTCCGTACGCTGTCAAGcgaggagaggctgAAGTGGACGGAGAAGGCGAAAGGCTCGACTGGAGAGGGTGCAGACCTCAAGAAAAGAAAGCGAGACGAAGAGGGGAATAATGAAGTGGACGAGCAGGTGGATGCGGATGAAAACAGCGCAAAGAAGAAAAAGCCTTTGGACACTTCAGCTAAGCTTTCGGCGTTTGCTTTCAACAAGAATTAATACTCACATTtagtgtttgctttttttttatttttatttttaatacttgcaAGTTCTTATAAATGTCTATTTTCTTGTAAACttcaaaaaaaactaaactaaaacttTACAATAAcccttgctcttttttttttttgtcttattcgtTTGTTTGTACATATTTCTGTGAACTGTTTAACTATATATGAAcctgaagacaaataaaatgttgactttta
>XM_026926036.2
ATTATTCGAAGCTTATTTCATTCATCCCGTTGGAAATTTTCTTCCGGCATCACAGGTGACGCGTTAATGGGTGGAGCCAAACAGCATGTTCTGACCAATAGAAGAGTGAGAAAGGTAGAAATCCACGCCTTCTTTTATACGTCATCATTTCGGCGCGGGAGACAGGAGTTGAAAGCCGTGTTTAAGAGAATTGCCGCCAATAACGAGGAGGACCTACGATGCCCTGTGAGAGGAAGCCGATGCGCTACGGCCACTCAGAGGGCCACACGGACGTCTGCTTTGACGAGCACAGCAAATGCATTGTTACGTGTGGAAGCGACGGAGACGTGCGCATATGGGAAAGTCTAGACGACGACGATCCTAAATCCATAAATGTCGGCGAGAAGGCCTACTCTGTAGCTTTGAGAGGTGGGAAATTAGTCACAGCCGTTTCCAACAACACTGTTCAGATCCACACGTTCCCCGATGGAGATCCCGATGGAATACTCACCCGTTTCACCACCAACGCAAACCACGTCGCCTTCAACTCCAGCGGCACACGAGTCGCTGCTGCCTCCAGTGACTTCCTGATAAAGGTGATTGAGGTGATGGACAGCAGTCAGCAGAAGACTCTACGTGGTCACGATGCACCTGTTCTCagtgtgacctttgaccccagcGATGAGTATGTTGCCTCCTCCAGTTGTGACGGCTCGGTGGCCGTGTGGTCTATAGAGGAGCAGACTCAAGTGGCGAACTGGAAGGTGCTGCAGAAGTCGAGTGACGTGAGCAACGCTAAGTCTCTGTGCAGACTCGCATGGCAAGGATCTGGGAAGctgcttGCAGTTCCAGTGGACACCACAGTACATCTGTATGAGAGAGACTCCTGGACTCATGTTGGCACTCTATCTGATGACCTTCTCACTCAGGTCGTTAACGTGGTGGTTTGGTCGCCGTGTGGGAAGTTTCTGGCAGCCGGAACAGTGGGAGGAACTCTCTCCGTTTGGGACGTTGAAGCGAAGCTGTGCATTGAGAGGCAGAAGCATGAGAAAGGCTACACGGTGTGCGGCATGGCCTGGCATCCCTCCGGAGGACAGATCGCTTACACGGACACCGAGGGCTGCCTGGGCCTGCTGGATGGCGTGTGTGcatcttcctcatcctcctcttcctcatcctcctcttccatTACCACGAAGAACACCACGGCTGCTGAGAGTAAAGAGCAGAACGGTTATGACGATCTGTTTGATGAGGATGACGGCGGCCTGCTAGATGAATGTCGGAGCGTCTCAGCGGGTGAAGAGGACGACGAGGTCCTCATGCCTGCCGCTCGCAAACCGCGCAGCAGAGGGAACGTCCTGGACGATGACGAGAACTCTAGAGACACCGGCTCGGTGAAGGTGGATCATTTAGCTGAGGATGATGGAGAGAGCGGCGTTTTGCCCGCTCCGGCGCCCCCCGTCGCAGCAGCGCCACGCCCGGTTTACGAGGGTCCCATGCCCACTGCGCCTCAGAGAGCCTTCCAACCCGGCTCCACTCCGGCACACCTCATGCACCGTTTCATGgtTTGGAACTCGGTGGGTATTGTGCGCAGCTACAACGATGAACAGGATAACGCCATCGATGTGGAGTTCCACGACACTGCCGTCCATCACGCCATGCACCTCACGAACACACTGGAGCACAGCATGGCCGATCTATCCCAGGAGGCTGTTCTGCTCGCCTGCGAAGGCACCGATGAACTCGCTAGcaagctgcaatgcctGCACTTCTCCACATGGGACACGAATAAGGAGTGGATAGTGGACCTGCCGAAAGGCGAGGACGTGAGGACGCTGTGTTTGGGACAAGGCTGGGCGGCGGCGGCCACCAGTGCCATGCTGGTGCGTCTCTTCTCCATCGGCGGCGTTCAGAGAGAGATTTTCAGCCTCCCGGGCCCTGTAGTGTGCATGGCTGGACACGGGGAGCAGCTTCTTATAGTCTATCACAGAGGGACTGGGTTTGACGGCGACCAGGCTCTCGGGGTGCAGCTTCTGCAGCTCGGCCAAAAAAGGAAGCAGATCATCCACGGTGAACCTCTGCCTCTTTCCCGCAAGTCCCACCTGACATGGATGGGCTTCAGTGCAGAAGGAACACCATGTGCCGTGGACTCGGAGGGCGTGGTGCGCATGCTGAATCGCTCTCTGGGAAACACATGGACTCCTGTGTGTAACACCAGAGACAACTGCAAGAGCAGGTCGGATCATTACTGGGTGGTCGGAATCCACGAGAATCCCCAGCAGCTCAGGTGCATTCCCTGTAAAGGATCCGTTTTTCCCCCGACTCTTCCTCGTCCTGCTGTGGCCATCCTGCCCTTCAAACTGCCCTTCTGCCAGACCAGCACGGAGAAAGGCCAGATGGAGGAGCAGTACTGGCGCTCGGTGCTCTTCCATAATCACTTTGGCTTCCTGTCGTCCAGCGGTTATGAGACGGACGTGGAGACTCAGAGGCAGCAGGAGAAGGAGCAGCAGGAGCTGTTGATGAAGATGTTCGCGCTGTCGTGTAAGCTGGAGCGCGAGTTCCGCTGTGTCGAGTTGGCTGAGATGATGACCCAGAGTGTGGTGACGCTCGCCATCCGCTACGCTTCACGCTCCAGGCGCATGCTTCTTGCTCAGAGGCTCAACGAGCTCGCTCTGGAGAAGGCCAGTCAGCTACAGGAGGAGGCGGAGCCAGAGGAGGAAGCAGCCTATCACAGCCAGGCACAAAATGCAAGATTTAGTCAAGCCAGTCGAGTCGCCAGACACTCGAGCAGCAGAGCGGCACAGGAAGACTGCGATGAAGAAGAGCAGGAAGACGAGGAAGAGCCGATGGAAGCAGAGGAAGAACCGGAAAGCAAAAAGTCACGTGTGAATCCGTTCAGTAAAGGCACAAAATCACCTGAAAAACCTTCCATCAAACCAGTCAGCAAAGAAGGCCGTGTGAACCCCTTTAAGGTCAGTGGATCAGGAAAGCCGTCCACGTCTTCATCACCACAGCCCAGAGCTACTAACGTTCTGGACAACATGACGGCAtccaacaggaaacacacatcGTCCAGTAAAGCTCCAGTGCTAAAGCCTCTGGCACCAAAACCACGCTCCAAGgctcaGGCTACATTGCTGCAGATGAGCACGTCTAAAATAGCTTCTAAGAAGCCGGAGGAGAAGGAGATGGAGAAACCGAGAGCAGAAAAACCTGAGAAACCAGCAGCAGCACCTGGAGACAACGTGGAGAACACCAGACCAAAGACCGGGTTCCAGTTGTGGCTCGAGGAGAACAGGAAGAGCATTCTCGCTGACAAGCCAGACCTGGAGGAGATGGACATCATTAAAGAGGCCATGAGCCGCTTCCGTACGCTGTCAAGcgaggagaggctgAAGTGGACGGAGAAGGCGAAAGGCTCGACTGGAGAGGGTGCAGACCTCAAGAAAAGAAAGCGAGACGAAGAGGGGAATAATGAAGTGGACGAGCAGGTGGATGCGGATGAAAACAGCGCAAAGAAGAAAAAGCCTTTGGACACTTCAGCTAAGCTTTCGGCGTTTGCTTTCAACAAGAATTAATACTCACATTtagtgtttgctttttttttatttttatttttaatacttgcaAGTTCTTATAAATGTCTATTTTCTTGTAAACttcaaaaaaaactaaactaaaacttTACAATAAcccttgctcttttttttttttgtcttattcgtTTGTTTGTACATATTTCTGTGAACTGTTTAACTATATATGAAcctgaagacaaataaaatgttgactttta

Function

symbol description
wdhd1 Predicted to enable chromatin binding activity. Predicted to be involved in DNA repair; DNA-dependent DNA replication; and mitotic cell cycle. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Is expressed in proliferative region. Orthologous to human WDHD1 (WD repeat and HMG-box DNA binding protein 1).

NR:

description
WD repeat and HMG-box DNA-binding protein 1 isoform X1

GO: NA

KEGG:

id description
K11274 WDHD1, CTF4; chromosome transmission fidelity protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926034.2 True 3783 mRNA 0.53 26 25336546 25361861
XM_026926036.2 False 3778 mRNA 0.53 26 25336546 25361859

Neighbor

gene id symbol gene type direction distance location
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding downstream 1287 25320510 ~ 25335259 (-)
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 84243 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 130073 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 229787 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 289760 25009783 ~ 25046786 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 7644 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 28070 25389931 ~ 25396747 (-)
ros1 NA coding upstream 36229 25398090 ~ 25418463 (-)
zgc:85722 LOC108270090,LOC108443409 coding upstream 69462 25431323 ~ 25468569 (-)
LOC117598272 LOC108270379 coding upstream 159503 25521364 ~ 25533476 (-)
G171573 samd4a non-coding downstream 44608 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 47044 25287152 ~ 25289502 (-)
G171572 NA non-coding downstream 49765 25286042 ~ 25286781 (-)
G171543 NA non-coding downstream 64784 25267902 ~ 25271762 (-)
G171545 NA non-coding downstream 70576 25264368 ~ 25265970 (-)
G171594 NA non-coding upstream 27722 25389583 ~ 25389871 (-)
G171710 NA non-coding upstream 107643 25469504 ~ 25470074 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding upstream 142527 25504388 ~ 25509620 (-)
G171755 NA non-coding upstream 411643 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 615935 25977796 ~ 25978027 (-)
G171569 NA other downstream 77184 25258839 ~ 25259362 (-)
G171256 NA other downstream 410322 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 792467 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2157035 23148743 ~ 23179511 (-)
G170435 NA other downstream 2472779 22855494 ~ 22863767 (-)
G171734 NA other upstream 217078 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2203397 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2309762 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2537621 27899482 ~ 27910890 (-)
G172919 NA other upstream 2550376 27912237 ~ 27912544 (-)

Expression


Co-expression Network