samd8 (LOC108269803)


Basic Information

Item Value
gene id samd8
gene name LOC108269803
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24431395 ~ 24440254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926039.2
TTCCTGTTTACATGCAGTGGCGTGGCTTGTGGCAGCATGGCAGTGACTCACACAGATACTAGTGATTCAGCTGCAGAGCTCACAGTGAGGCTTCCTAATCACATCACTGGGAAGGTATGGTGACGGGTGCTGGGGTTGAGGGCTGGAGCATTAAGGAGGTGGCTCTCTGGCTCAGAGAGCAGGGCTTCAGTGAATACGTGGAGGTGCTTTGCACTAAGCACCGTGTGGACGGAGCCGCATTGTTGTGTCTAACAGAACATGACCTGCGATCCCCACCCCTGCAGCTCCCGAGGCTCGGGGACATCAAGAGGCTCGCACTTGCCCTGCGAGGGCTtcagagacaacacacacacttacacactccacTCAGTGACTTTGGCTCAAAtggtgtgtttctctcacataCCTCAGGATCAAAACGCTGTTTATGGAATGGCAGCATAGACAAAAACCACCCACAGTATAATGGGATCGGCATGGCGGTGTGGGAGGAGCATTGTCACGGTTACACAAATGGGAAATGTAAGAAGGACTACGGCTACCTGGATCCAGAGGGATGGAAGACAGCTCTGAGCTCTGTCTACGTGATGCTTGTGTTTGGCATCACCTCCTTTGTCATGGTGCTGGTGCATGAGAGGGTGCCTGACATGCGAACCTACCCACCCCTGCCTGATATATTCCTCGacagTGTACCTAGAATTCCCTGGGCTTTTGCCATGGCTGAGGCCTGTGCTCTCGTCCTGTGTTACATATTACTGCTAATACTGCTGCTGCACAAACACAGatctaTTCTCTTTCGCAGATTCTGTAGTTTAACAGGGACCGTGTTCCTGCTTCGCTGTGTCACCATGTTCGTCACCTCCCTGTCTGTCCCTGGACATCATCTGCAGTGCTCAGGAAAGATGTACGGTGATATCTGGGCAAAACTCCTGCGCGCATTAGAGATTTGGAGCGGCTTTGGCATGTCCCTGACAGGGGTACACACGTGTGGAGATTACATGTTCAGCGGACACACAGTGGTTCTCACCATGCTCAACTTCTTCGTCACAGAGTACACTCCACGTAACTGGCACATTTTGCACACGCTGGCATGGGTGCTGAACCTGTTTGGGATCTTCTTCATCCTGGCTGCTCATGAGCACTACTCCATTGACGTTTTCATCGCCTTCTACATCACCACTCGGTTGTTCTTGTACTACCACACGCTGGCCAACACGCGGGCGTACCAGCACAGCCGCCGAGCTCGCATCTGGTTTCCCATGTTCTCCTTCTTCGAGTGCAACATCAACGGTCCCATCCCCAACGAGTACTGCTGGCCCTTCTCCAGGCCTGCCTTCATGAAAACACTCATTGGctagaaagaaagtgtgtgtgtcacagttaGACTGTCTTGATTGGTTGGCCGATGGATTTAGATTGTTAAGgagaataatatatttattcagtgGTTCTTCTTTAGGATGAATGGCAGCATTTGGTACTTTGCTGTCAGCTGAAGAGAATCTTTTGTGTTGTGGACTAAAACACTAATCTTGTTCTAGTCAGTACCAACTGGGCACATTCCTATGAAGGAGAACCGAAGTCCAGGGTTCTTTCTTATCTCATTtggtaataaatatttacagtagaaCTGAAGAGCTGGCTAAAGATGTAGCATCGCACATTACagtacactgacactgaaactCACAGTAGTTGGCTAAGATGTGTTCAGCTGCACaatatcagtttttttaatgtatgctttttttttaatgtaaatgatcTAACAAAAGTCTGTTGTTTACAGTGATGGTGTGAGAAGTTTAAACTCCAGCATGGTTTCAGCTTTTGTATTCAAAATCCTGGCTGTGAATTTGAAGGATTGCATTTCTCCATCTTCTCAGAGTAGCAGTGCTACTTTTTACAGATATCCTAAAATCACAGAGGGTAGCTGTACTTATTGTGGCTTTAATATAAAACAGTGGAGTCTCCAcaaccttttttccccagaagTATTACCAAGTACAATGCACATAGTGATGTTGTTACTCAATGAGAAAGCtcagggttttaaaaaaaaaaaaaaaaagacaaaaaaatcaactCCCAGCTCCGTTTGTTTCACTGCACCCTGTTCAAACTGGATGGTGTTTGACTCTTGACTGTTAGAAAGGCTGTTTCTAGTAGTCTGCTCTCTTTCTGTGACATGCAAATGGTTCTATATGTAGTAATAAgttcagttttatatataattttgaatGATCATGTGCAGGACTCATAGGATGAtcatgtgtgagagaaagataagaacaaaaaaaaatgctacattaataaatatttctaacaCTGTA
>XM_034307735.1
agactggggtcccatccagtgtgtattccttcTTCTGTTGCATAAatgtcaaacattcatgcaaacTTTGGACAATTTCAGTACAGAAACAACAGCGGACAATAGTATGGTGACGGGTGCTGGGGTTGAGGGCTGGAGCATTAAGGAGGTGGCTCTCTGGCTCAGAGAGCAGGGCTTCAGTGAATACGTGGAGGTGCTTTGCACTAAGCACCGTGTGGACGGAGCCGCATTGTTGTGTCTAACAGAACATGACCTGCGATCCCCACCCCTGCAGCTCCCGAGGCTCGGGGACATCAAGAGGCTCGCACTTGCCCTGCGAGGGCTtcagagacaacacacacacttacacactccacTCAGTGACTTTGGCTCAAAtggtgtgtttctctcacataCCTCAGGATCAAAACGCTGTTTATGGAATGGCAGCATAGACAAAAACCACCCACAGTATAATGGGATCGGCATGGCGGTGTGGGAGGAGCATTGTCACGGTTACACAAATGGGAAATGTAAGAAGGACTACGGCTACCTGGATCCAGAGGGATGGAAGACAGCTCTGAGCTCTGTCTACGTGATGCTTGTGTTTGGCATCACCTCCTTTGTCATGGTGCTGGTGCATGAGAGGGTGCCTGACATGCGAACCTACCCACCCCTGCCTGATATATTCCTCGacagTGTACCTAGAATTCCCTGGGCTTTTGCCATGGCTGAGGCCTGTGCTCTCGTCCTGTGTTACATATTACTGCTAATACTGCTGCTGCACAAACACAGatctaTTCTCTTTCGCAGATTCTGTAGTTTAACAGGGACCGTGTTCCTGCTTCGCTGTGTCACCATGTTCGTCACCTCCCTGTCTGTCCCTGGACATCATCTGCAGTGCTCAGGAAAGATGTACGGTGATATCTGGGCAAAACTCCTGCGCGCATTAGAGATTTGGAGCGGCTTTGGCATGTCCCTGACAGGGGTACACACGTGTGGAGATTACATGTTCAGCGGACACACAGTGGTTCTCACCATGCTCAACTTCTTCGTCACAGAGTACACTCCACGTAACTGGCACATTTTGCACACGCTGGCATGGGTGCTGAACCTGTTTGGGATCTTCTTCATCCTGGCTGCTCATGAGCACTACTCCATTGACGTTTTCATCGCCTTCTACATCACCACTCGGTTGTTCTTGTACTACCACACGCTGGCCAACACGCGGGCGTACCAGCACAGCCGCCGAGCTCGCATCTGGTTTCCCATGTTCTCCTTCTTCGAGTGCAACATCAACGGTCCCATCCCCAACGAGTACTGCTGGCCCTTCTCCAGGCCTGCCTTCATGAAAACACTCATTGGctagaaagaaagtgtgtgtgtcacagttaGACTGTCTTGATTGGTTGGCCGATGGATTTAGATTGTTAAGgagaataatatatttattcagtgGTTCTTCTTTAGGATGAATGGCAGCATTTGGTACTTTGCTGTCAGCTGAAGAGAATCTTTTGTGTTGTGGACTAAAACACTAATCTTGTTCTAGTCAGTACCAACTGGGCACATTCCTATGAAGGAGAACCGAAGTCCAGGGTTCTTTCTTATCTCATTtggtaataaatatttacagtagaaCTGAAGAGCTGGCTAAAGATGTAGCATCGCACATTACagtacactgacactgaaactCACAGTAGTTGGCTAAGATGTGTTCAGCTGCACaatatcagtttttttaatgtatgctttttttttaatgtaaatgatcTAACAAAAGTCTGTTGTTTACAGTGATGGTGTGAGAAGTTTAAACTCCAGCATGGTTTCAGCTTTTGTATTCAAAATCCTGGCTGTGAATTTGAAGGATTGCATTTCTCCATCTTCTCAGAGTAGCAGTGCTACTTTTTACAGATATCCTAAAATCACAGAGGGTAGCTGTACTTATTGTGGCTTTAATATAAAACAGTGGAGTCTCCAcaaccttttttccccagaagTATTACCAAGTACAATGCACATAGTGATGTTGTTACTCAATGAGAAAGCtcagggttttaaaaaaaaaaaaaaaaagacaaaaaaatcaactCCCAGCTCCGTTTGTTTCACTGCACCCTGTTCAAACTGGATGGTGTTTGACTCTTGACTGTTAGAAAGGCTGTTTCTAGTAGTCTGCTCTCTTTCTGTGACATGCAAATGGTTCTATATGTAGTAATAAgttcagttttatatataattttgaatGATCATGTGCAGGACTCATAGGATGAtcatgtgtgagagaaagataagaacaaaaaaaaatgctacattaataaatatttctaacaCTGTA

Function

NR:

description
PREDICTED: sphingomyelin synthase-related protein 1-like isoform X1

GO: NA

KEGG:

id description
K22697 SAMD8; sphingomyelin synthase-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926039.2 True 2333 mRNA 0.46 6 24431395 24440254
XM_034307735.1 False 2323 mRNA 0.45 6 24431395 24438079

Neighbor

gene id symbol gene type direction distance location
dnal1 dnal1 coding downstream 22613 24403823 ~ 24408782 (-)
tedc1 c9h14orf80 coding downstream 29836 24391053 ~ 24401559 (-)
tmem121aa tmem121a,tmem121,LOC108270236,LOC107674105,LOC107592808,LOC107697696,LOC107594772 coding downstream 51289 24364002 ~ 24380106 (-)
ccdc28a ccdc28a coding downstream 100300 24326943 ~ 24331095 (-)
LOC113534192 ect2l coding downstream 110898 24306999 ~ 24320497 (-)
smndc1 smndc1,LOC107671123,LOC107668620,LOC107552887 coding upstream 3543 24443797 ~ 24449962 (-)
tmem30b LOC108269804 coding upstream 14147 24454401 ~ 24462936 (-)
cep295 LOC108269817 coding upstream 533785 24974039 ~ 24991828 (-)
si:ch211-266o15.1 LOC108269816 coding upstream 569529 25009783 ~ 25046786 (-)
nid2a nid2,wu:fb77a09 coding upstream 616110 25056364 ~ 25106759 (-)
G171056 NA non-coding downstream 146994 24284009 ~ 24284401 (-)
G171028 NA non-coding downstream 183380 24247685 ~ 24248015 (-)
G170936 NA non-coding downstream 396497 24034508 ~ 24034898 (-)
G170887 NA non-coding downstream 432684 23995566 ~ 23998711 (-)
G170866 NA non-coding downstream 512372 23918425 ~ 23919023 (-)
G171175 kdm1a non-coding upstream 27969 24468223 ~ 24469486 (-)
G171184 NA non-coding upstream 88073 24528327 ~ 24528696 (-)
G171232 NA non-coding upstream 158021 24598275 ~ 24655253 (-)
G171258 NA non-coding upstream 326656 24766910 ~ 24801063 (-)
G171257 NA non-coding upstream 342763 24783017 ~ 24915150 (-)
greb1 greb1 other downstream 1251884 23148743 ~ 23179511 (-)
G170435 NA other downstream 1567628 22855494 ~ 22863767 (-)
G170023 NA other downstream 2315519 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 3311770 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 3613956 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 49984 24490238 ~ 24544079 (-)
G171256 NA other upstream 341028 24781282 ~ 24926224 (-)
G171569 NA other upstream 818585 25258839 ~ 25259362 (-)
G171734 NA other upstream 1138685 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3125004 27565258 ~ 27652301 (-)

Expression


Co-expression Network