vrk1 (vrk1)


Basic Information

Item Value
gene id vrk1
gene name vrk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26405390 ~ 26419207 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926048.2
gcgccaaacaggaagttgcgTATTCCCGTGTTGTCCAATTAGGTGCTTCGTCATGCTTCCGCTCTGAGAGTTGTGCGGGAAGTTTGGAGCTGCTAAGcgtttgtatttatttgcactttgtAACTACTGTTGTGTACAGGTTCAGATGCCACCCAAAGCCAAGGCAGCTGGGAAAGCTAAAGGGCCGGCGAAGAGGAAGCTGGCCGAGGAGTTCCCGCCCGGAGAGGTTCTAACAGACACGGCGAAGAAAAGCTGGAAGCTCGGGACGCCTGTTGGTCAGGGAGGCTTTGGCCTGTTGTATCTGGCAAGCGATGATACGTCCAGGGCTGTCGGAGCCGACGCACCTTACGTCATCAAAGTGGAGCCAAGCGATAACGGCCCTCTCTTCTCCGAGCTGAAGTTTTACATGCGAGCAGCCAAGCCTGATCTAATCGGCGCTTGGATAAAGTCCCGGAAACTGAAATACTTAGGGGTGCCAAAATATTGGGGCTCAGGACTTCACGAGAAAGGAGGAAAGAGGTACAGGTTCATGGTCATGGACAGATTCGGAACGGATCTACAGAAGAAGTTCGAGGAAGGCGGAAAGAGATTTCCACGGAAGTTGGTTCTTCAGCTTGGCCTTAGACTTCTGGACATCCTCGAGTACATCCACGAGCATGAATACGTCCACGCCGATATTAAAGCCTCCAACCTCCTACTTTCCCATAAGAACCCCAATCAGGTTTACTTGGTGGATTACGGACTGGCCTACAGATATTCGCCGGAAGGTGTGCCGAAGGAGTACAAAGAAGACCCGAAGAAATGCCACGATGGGACCATTGAGTTCACCAGCATTGACGCACATCATggagtctCTCCTTCCAGAAGAGGAGACCTTGAGATCCTGAGCTACTGCATGATCCAGTGGCTGTGCAGCCGCCTGCCCTGGGAGGATAAACTCCAGGACCCGGTTTACGTCAGAGACTCGAAAATACGATGTCGCAACAATATCAGAGATTTCATGAAGAGCTGCTTCACTACAGGACATGAACCAGAGGAAATGATAAAGTTTATGGAGGAGGTGAAGGCGCTGGGCTACACGGATAAACCCGACTACACCAAGCTGCGCAGCATTTTGCAGCAGGGACTAAAAAGCATCGGCGCCACTGACGATGACAAGCTGGACTTCGCAGCGTCTGTGTCCGGTGCAGGGCCGTCCTCGGTCAAGACTCCTAAGCgaaaaaaagcagcagaaaaaGAGGCATCTAATGACGAAACTGATAGCTCCTCTGCAAAGAAGAGACGTCCGGCTCAGAAGAAGGAAGTGAATGGCGTGAAGAGGACCGGCGTGAAGAGGTCCAGTCCGAAGAAGCGCGTCGTAGAGACGGGAACGCAGACTTCCCCCATGGTGGAAGTAAAGAGAAGCCGTGGCAGGCCCAAGAAGACCGCATAG
>XM_034307767.1
ATGCCACCCAAAGCCAAGGCAGCTGGGAAAGCTAAAGGGCCGGCGAAGAGGAAGCTGGCCGAGGAGTTCCCGCCCGGAGAGGTTCTAACAGACACGGCGAAGAAAAGCTGGAAGCTCGGGACGCCTGTTGGTCAGGGAGGCTTTGGCCTGTTGTATCTGGCAAGCGATGATACGTCCAGGGCTGTCGGAGCCGACGCACCTTACGTCATCAAAGTGGAGCCAAGCGATAACGGCCCTCTCTTCTCCGAGCTGAAGTTTTACATGCGAGCAGCCAAGCCTGATCTAATCGGCGCTTGGATAAAGTCCCGGAAACTGAAATACTTAGGGGTGCCAAAATATTGGGGCTCAGGACTTCACGAGAAAGGAGGAAAGAGGTACAGGTTCATGGTCATGGACAGATTCGGAACGGATCTACAGAAGAAGTTCGAGGAAGGCGGAAAGAGATTTCCACGGAAGTTGGTTCTTCAGCTTGGCCTTAGACTTCTGGACATCCTCGAGTACATCCACGAGCATGAATACGTCCACGCCGATATTAAAGCCTCCAACCTCCTACTTTCCCATAAGAACCCCAATCAGGTTTACTTGGTGGATTACGGACTGGCCTACAGATATTCGCCGGAAGGTGTGCCGAAGGAGTACAAAGAAGACCCGAAGAAATGCCACGATGGGACCATTGAGTTCACCAGCATTGACGCACATCATggagtctCTCCTTCCAGAAGAGGAGACCTTGAGATCCTGAGCTACTGCATGATCCAGTGGCTGTGCAGCCGCCTGCCCTGGGAGGATAAACTCCAGGACCCGGTTTACGTCAGAGACTCGAAAATACGATGTCGCAACAATATCAGAGATTTCATGAAGAGCTGCTTCACTACAGGACATGAACCAGAGGAAATGATAAAGTTTATGGAGGAGGTGAAGGCGCTGGGCTACACGGATAAACCCGACTACACCAAGCTGCGCAGCATTTTGCAGCAGGGACTAAAAAGCATCGGCGCCACTGACGATGACAAGCTGGACTTCGCAGCGTCTGTGTCCGGTGCAGGGCCGTCCTCGGTCAAGACTCCTAAGCgaaaaaaagcagcagaaaaaGAGGCATCTAATGACGAAACTGATAGCTCCTCTGCAAAGAAGAGACGTCCGGCTCAGAAGAAGGAAGTGAATGGCGTGAAGAGGACCGGCGTGAAGAGGTCCAGTCCGAAGAAGCGCGTCGTAGAGACGGGAACGCAGACTTCCCCCATGGTGGAAGTAAAGAGAAGCCGTGGCAGGCCCAAGAAGACCGCATAGCTCTCCTCTTTTAAACTGTTACaacttcttttcctctttttaaacTTGTCTGGATTATTTCCTAGCTGTACATTTTCTGTtccttaactttttttttttccacaggatGTTGGGTACATCctcagtaaaataataaataacaaaaaaaagta

Function

symbol description
vrk1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in Golgi disassembly and peptidyl-serine phosphorylation. Predicted to act upstream of or within cell division and protein phosphorylation. Predicted to be located in Golgi stack. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 1A. Orthologous to human VRK1 (VRK serine/threonine kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase VRK1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0090166 Golgi disassembly biological_process
GO:0005795 Golgi stack cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926048.2 False 1432 mRNA 0.52 13 26405390 26419055
XM_034307767.1 True 1439 mRNA 0.50 12 26407679 26419207

Neighbor

gene id symbol gene type direction distance location
ak7b LOC108269780 coding upstream 45299 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 57050 26334822 ~ 26348340 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 71334 26323399 ~ 26334056 (+)
LOC113534080 NA coding upstream 92883 26307077 ~ 26312507 (+)
si:dkey-87k14.1 flrt2,LOC107583684,LOC107750877 coding upstream 187222 26213268 ~ 26218168 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 484432 26903639 ~ 26914229 (+)
trnat-ugu_12 NA coding downstream 496151 26915358 ~ 26915430 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 584902 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 588727 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 1307671 27726878 ~ 27760866 (+)
G171684 NA non-coding upstream 626658 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 812641 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 882701 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 1015885 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 1016224 25388772 ~ 25389166 (+)
LOC117598331 NA non-coding downstream 206733 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 370316 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 383849 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 447910 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 548125 26967332 ~ 26967536 (+)
LOC113534148 NA other upstream 974461 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1087113 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1227493 25176374 ~ 25177897 (+)
G171329 NA other upstream 1397624 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1404771 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 737136 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 1306000 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1608793 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2442255 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2635026 29054233 ~ 29138878 (+)

Expression


Co-expression Network