marcksb (LOC108270344)


Basic Information

Item Value
gene id marcksb
gene name LOC108270344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25578893 ~ 25582638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926060.2
TTCTATGCGGTGACGAAATTTCGGGCGTTGTACATCGCATCTCATTAACAAAAGAAGCAATTtcattagcttttttttatatatctctatatctctcCTCTGTAATTACTTCCAGaaaacatttattgttatttttcctCCGCGTGTGAACTTTCAGCCCGGGTTTTGGTCTCGGCggttgttttatttgttgaaaaggcggtgaagaagaagaagaggagcggtagaagaaggaggagaaggcgCTCGCGCGGTCCGTCGCtctttgttcattcattcattcgggGTTTCTTTGTTGCGCGTGAATTCTGGTGAAAGCATGGGAGCTCAAGTGGCTAAAAACGGTGCAAAAGAGGAAATCGGTGCAGAAAAAGCAAACGGACAGGAAAATGGGCATGCTAAGACAAACGGCAATGCCTCCCCTACAGCAGACGGAGCTGCCGAGGAGGTCCAGGCCAACGGCAAACACTCCGCCGACGGCGAGGTGAAGGCTGAAGATGGAGCAGCCGAGAAGGCGACGGAGGAAGGCGGCGCCGCTGAAAGTGCTCCGGTAGCCAACGGCGAGGACTCGAGCAAACCAGAAGAGAACGGCTCTGCGTCTGGAAGCGGCGAGCCTGCCAAGCAGAAGAAGcgattttcctttaaaaagccGTTCAAACTCAGCGGCTTCTCCTTTAAGAAGAGCACCAAGAAGGAAGCCGAGACAGAGGAGGCGGCCGCTCCAGCCGAGGAAGGCAAAGATAAAGCCGAATCCGAGGAGGCCAAGCCAGAGGCATctggagaagagaaagagaaagaggaagcagCCGAGGGGGCCAAAGCCGATCAGCCGAGCGCagatgaggagaaaaaaacaagcgaAGAGCAGAAGCCCGAGACGCCTGCAGAAGAGAAACCGGCCGAAGCTGCAGCTGAAGAGCCAGCGCCAGCCCCGGCACCAGCCGAGAGCTCAGATGCTCAACCCGCTGCTGCTGAAGAGTAACACGGTTCACCAGGTGATGACGGCTTTTTAATGAAGTAATAAGGAGCTGAACCACGGAGGctttttgtacaaaaaaaacaaacaaacaaaaaaaaaa
>XM_034307768.1
TTCTATGCGGTGACGAAATTTCGGGCGTTGTACATCGCATCTCATTAACAAAAGAAGCAATTtcattagcttttttttatatatctctatatctctcCTCTGTAATTACTTCCAGaaaacatttattgttatttttcctCCGCGTGTGAACTTTCAGCCCGGGTTTTGGTCTCGGCggttgttttatttgttgaaaaggcggtgaagaagaagaagaggagcggtagaagaaggaggagaaggcgCTCGCGCGGTCCGTCGCtctttgttcattcattcattcgggGTTTCTTTGTTGCGCGTGAATTCTGGTGAAAGCATGGGAGCTCAAGTGGCTAAAAACGGTGCAAAAGAGGAAATCGGTGCAGAAAAAGCAAACGGACAGGAAAATGGGCATGCTAAGACAAACGGCAATGCCTCCCCTACAGCAGACGGAGCTGCCGAGGAGGTCCAGGCCAACGGCAAACACTCCGCCGACGGCGAGGTGAAGGCTGAAGATGGAGCAGCCGAGAAGGCGACGGAGGAAGGCGGCGCCGCTGAAAGTGCTCCGGTAGCCAACGGCGAGGACTCGAGCAAACCAGAAGAGAACGGCTCTGCGTCTGGAAGCGGCGAGCCTGCCAAGCAGAAGAAGcgattttcctttaaaaagccGTTCAAACTCAGCGGCTTCTCCTTTAAGAAGAGCACCAAGAAGGAAGCCGAGACAGAGGAGGCGGCCGCTCCAGCCGAGGAAGGCAAAGATAAAGCCGAATCCGAGGAGGCCAAGCCAGAGGCATctggagaagagaaagagaaagaggaagcagCCGAGGGGGCCAAAGCCGATCAGCCGAGCGCagatgaggagaaaaaaacaagcgaAGAGCAGAAGCCCGAGACGCCTGCAGAAGAGAAACCGGCCGAAGCTGCAGCTGAAGAGCCAGCGCCAGCCCCGGCACCAGCCGAGAGCTCAGATGCTCAACCCGCTGCTGCTGAAGAGTAACACGGTTCACCAGtgcgTGCTAGGAAAACGGTGCTACCAACAAGCGAACGAGGCGTGTAGATGAGACCCAGATCAGATTAAGGTCTGTTTTTACACGTCACATGAAGCGTTCAGAATGGGTGCTCAGATATTACACCAGCAGCACCGCTCAAATCCGGCAGCACTGTGTGCTTGTATAGGCTTCGTCATgtctttaatctttttaaacttttttcagtCCTATAGGTAAAGTCCGACCCTCTTCTAACCCTGCTGTAGATCCAACTTGTTGACCTGTGATGACTAATACAgttagtttgttttgtttttttcctacaaTGCTGTGCAAGTATATATAAAAGTTGCCAGTGCAATCAAATAGATTACAGTTTGCTGTAAATACTCAAGGTCTGACACTACCTGGTTTTTAAACGGAATGTAACTTTGCGTACAGAAGTATGAATTCAACTTCAACGggcacaaaaaaacacaaataaaggattaaaaagaacaaagtgtctgtgtggatttcaCCAATTCATGTGTTCTCTTTAGGTCAGTATTATATATAAGTTGTACTAAATGTGTGGAAcaatacaaatttttttt

Function

NR:

description
myristoylated alanine rich protein kinase C substrate b

GO:

id name namespace
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0060541 respiratory system development biological_process
GO:0007420 brain development biological_process
GO:0010842 retina layer formation biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926060.2 False 1079 mRNA 0.52 2 25578893 25581753
XM_034307768.1 True 1570 mRNA 0.48 3 25578893 25582638

Neighbor

gene id symbol gene type direction distance location
fabp7a fabp7a,LOC108443406,LOC108269522,LOC107693085,LOC107723744,LOC107583466,LOC107751758 coding upstream 72383 25504482 ~ 25506510 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding upstream 84638 25490275 ~ 25494255 (+)
si:ch211-266g18.6 LOC107680798 coding upstream 89731 25469458 ~ 25489162 (+)
gnpnat1 gnpnat1,LOC107693128 coding upstream 190233 25381712 ~ 25388660 (+)
gpr137c gpr137c coding upstream 340302 25206836 ~ 25238591 (+)
rragd LOC108270433,LOC108435430,LOC107755772,LOC107693082,LOC107583676,LOC107751745 coding downstream 102211 25684849 ~ 25704808 (+)
gabrr2a gabrr2a,LOC108269496,LOC108435431,LOC107693119,LOC107755784,LOC107680781 coding downstream 136887 25719525 ~ 25738670 (+)
syne3 syne3 coding downstream 158437 25741075 ~ 25772866 (+)
clmn clmn,LOC107583621 coding downstream 211937 25794575 ~ 25828035 (+)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 coding downstream 247227 25829865 ~ 25858423 (+)
G171619 NA non-coding upstream 56204 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 189388 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 189727 25388772 ~ 25389166 (+)
G171485 NA non-coding upstream 299216 25271849 ~ 25279677 (+)
G171440 NA non-coding upstream 339829 25189165 ~ 25239064 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding downstream 4851 25587489 ~ 25592749 (+)
G171684 NA non-coding downstream 99756 25682394 ~ 25778732 (+)
LOC117598331 NA non-coding downstream 1043302 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 1206885 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 1220418 26803056 ~ 26839478 (+)
LOC113534148 NA other upstream 147964 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 260616 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 400996 25176374 ~ 25177897 (+)
G171329 NA other upstream 571127 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 578274 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 1573705 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2142569 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 2445362 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 3278824 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 3471595 29054233 ~ 29138878 (+)

Expression


Co-expression Network