gnpnat1 (gnpnat1,LOC107693128)


Basic Information

Item Value
gene id gnpnat1
gene name gnpnat1,LOC107693128
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25381712 ~ 25388660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926079.2
TGCCCATCGCCCTGAGTGACGCAGGCGGAAGTGCGGCGCGCCGGAgctccactcactcactcactgcatCTGAACACACTTTACTTTGACAACATTTGGGTTATTAAACCAAACCTCGCTTGTGATCGACGTATGTTTGAGGCCTGTGGGATGTTGCTGGACGAGACGCCGCTGTTTGacccctctctgctccaggagcTGGACTGGAGCAGCAGCAAGGTGTCCTTCTCACCCCCCATCTCACCCTTAGAGCCCGGAGACGGCCTCGTCCTCCGTCCTCTCCGCCCTGCCGACTTAGACAGAGGACTGTATAAGGTGCTGTCGCAGCTCACGGTGGCAGGAGACGTCACAAAAGAGCAGTTCAAAGCGAATTTTGAACACATGAAGAAAACGGGCGACTACTACGTCATCGTTGTCGAGGACACAAACGTTGGACAGATCGTTGCCACGGCGATGCTCATCGTAGAGCACAAGTTCATCCATGCGTGTGCAAAGCGAGGGCGTGTTGAGGAGGTGGTGGTCAGCGACGTCTGCCGAGGGAAGCAGCTGGGAAAACTGCTCGTCGCAACATTGACTCTGCTCAGCAAAAAACTGCAGTGCTACAAGATCACGCTGGAGTGCGCACAGAAAAACGTGGAATTCTACAAGAAGCTGGGTTACACGCCCTCGGAGGAGACCTACATGCAGTGTCGCTTCTTCGACTGAGTCCTTCAGGGACGTTACAGAGCGTGCAGCTCCTGATATCCGAGCTCACGCTGACTGTAGGTTTACCTTGCTTCTGTGCCATTTTCCACAAGGACGAGCCGAGACTTGCTGGTAGTCTgggacaaaacaaaaccacagcaTGATGAAGGATTGCGGCTCGTGAAAGTAGAATATGAAGTAGCGGTCGCTAATACTCTCAGAAGGTCTCTTCATTTGTTAGTCATTTATGCTGGAAGCTATCTTTAAGAAGAAGGTACttgaatattttctaaaaaaaaacaaaaaaaaacagaggtataacttttctattctattctacatggtaatttatattttacttataaTAAACAGTACCAAAATATTCTCTGATGCAGAACGAAGACCAGTTTTGCAAATTGTTGCGTCGACTTCGAGCGTGTTTTGCTTACACACAATCATGTATCATTCTGCATTTTTTATGATAGTTtgtccaaaaa

Function

symbol description
gnpnat1 Predicted to enable glucosamine 6-phosphate N-acetyltransferase activity and monosaccharide binding activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human GNPNAT1 (glucosamine-phosphate N-acetyltransferase 1).

NR:

description
glucosamine 6-phosphate N-acetyltransferase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K00621 GNPNAT1, GNA1; glucosamine-phosphate N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926079.2 True 1181 mRNA 0.48 6 25381712 25388660

Neighbor

gene id symbol gene type direction distance location
gpr137c gpr137c coding upstream 143121 25206836 ~ 25238591 (+)
LOC117598271 LOC108191637 coding upstream 208398 25171545 ~ 25173314 (+)
ptger2a LOC108269911 coding upstream 248822 25114777 ~ 25132890 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 326462 25047670 ~ 25055250 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding upstream 520680 24783003 ~ 24861032 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 80798 25469458 ~ 25489162 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding downstream 101615 25490275 ~ 25494255 (+)
fabp7a fabp7a,LOC108443406,LOC108269522,LOC107693085,LOC107723744,LOC107583466,LOC107751758 coding downstream 115822 25504482 ~ 25506510 (+)
marcksb LOC108270344 coding downstream 190233 25578893 ~ 25582638 (+)
rragd LOC108270433,LOC108435430,LOC107755772,LOC107693082,LOC107583676,LOC107751745 coding downstream 296189 25684849 ~ 25704808 (+)
G171485 NA non-coding upstream 102035 25271849 ~ 25279677 (+)
G171440 NA non-coding upstream 142648 25189165 ~ 25239064 (+)
G171430 LOC108191637 non-coding upstream 205479 25175826 ~ 25176233 (+)
G171413 NA non-coding upstream 246827 25134600 ~ 25134885 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding upstream 305237 25072746 ~ 25076475 (+)
G171522 NA non-coding downstream 112 25388772 ~ 25389166 (+)
G171523 NA non-coding downstream 706 25389366 ~ 25389505 (+)
G171619 NA non-coding downstream 129456 25518116 ~ 25522689 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding downstream 198829 25587489 ~ 25592749 (+)
G171684 NA non-coding downstream 293734 25682394 ~ 25778732 (+)
samd4a samd4a other upstream 63435 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 203815 25176374 ~ 25177897 (+)
G171329 NA other upstream 373946 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 381093 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 898858 24463466 ~ 24482854 (+)
LOC113534148 NA other downstream 38231 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 1767683 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2336547 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 2639340 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 3472802 28861462 ~ 28935700 (+)

Expression


Co-expression Network