Item | Value |
---|---|
gene id | nrxn3a |
gene name | nrxn3,LOC107583487 |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047604.1 |
NCBI id | CM018550.1 |
chromosome length | 29376037 |
location | 27156343 ~ 27467566 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
nrxn3 | Predicted to enable calcium channel regulator activity. Involved in several processes, including learning; social behavior; and vocalization behavior. Predicted to be located in GABA-ergic synapse. Predicted to be part of protein-containing complex. |
description |
---|
PREDICTED: neurexin 3 isoform X15 |
id | name | namespace |
---|---|---|
GO:0051965 | positive regulation of synapse assembly | biological_process |
GO:0007269 | neurotransmitter secretion | biological_process |
GO:0001525 | angiogenesis | biological_process |
GO:0090129 | positive regulation of synapse maturation | biological_process |
GO:0007155 | cell adhesion | biological_process |
GO:0016021 | integral component of membrane | cellular_component |
GO:0046872 | metal ion binding | molecular_function |
id | description |
---|---|
K07377 | NRXN; neurexin |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026926092.2 | True | 6868 | mRNA | 0.52 | 24 | 27156343 | 27467566 |
XM_026926094.2 | False | 6859 | mRNA | 0.52 | 24 | 27156343 | 27467566 |
XM_026926095.2 | False | 6853 | mRNA | 0.52 | 23 | 27156343 | 27467566 |
XM_026926096.2 | False | 6844 | mRNA | 0.52 | 23 | 27156343 | 27467566 |
XM_026926097.2 | False | 6841 | mRNA | 0.52 | 23 | 27156343 | 27467566 |
XM_026926099.2 | False | 6841 | mRNA | 0.53 | 23 | 27156343 | 27467566 |
XM_026926100.2 | False | 6826 | mRNA | 0.52 | 22 | 27156343 | 27467566 |
XM_026926101.2 | False | 6799 | mRNA | 0.53 | 21 | 27156343 | 27467566 |
XM_026926102.2 | False | 6556 | mRNA | 0.52 | 24 | 27156343 | 27467566 |
XM_026926103.2 | False | 6547 | mRNA | 0.52 | 24 | 27156343 | 27467566 |
XM_026926104.2 | False | 6226 | mRNA | 0.52 | 24 | 27156343 | 27467566 |
XM_026926105.2 | False | 6217 | mRNA | 0.52 | 24 | 27156343 | 27467566 |
XM_026926106.2 | False | 6211 | mRNA | 0.52 | 23 | 27156343 | 27467566 |
XM_026926107.2 | False | 6184 | mRNA | 0.52 | 22 | 27156343 | 27467566 |
XM_026926109.2 | False | 6085 | mRNA | 0.52 | 21 | 27156343 | 27467566 |
XM_026926110.2 | False | 2872 | mRNA | 0.51 | 7 | 27352993 | 27467566 |
XM_026926111.2 | False | 2791 | mRNA | 0.51 | 6 | 27352993 | 27467566 |
XM_034307961.1 | False | 6778 | mRNA | 0.53 | 23 | 27156343 | 27467566 |
XM_034307962.1 | False | 6736 | mRNA | 0.53 | 21 | 27156343 | 27467566 |
XR_003403449.2 | False | 5531 | misc_RNA | 0.53 | 25 | 27156343 | 27465649 |
XR_003403450.2 | False | 5522 | misc_RNA | 0.53 | 25 | 27156343 | 27465649 |
XR_003403451.2 | False | 5516 | misc_RNA | 0.53 | 24 | 27156343 | 27465649 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
adck1 | adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 | coding | upstream | 30438 | 27007934 ~ 27125905 (+) |
slirp | slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 | coding | upstream | 149594 | 27004109 ~ 27006749 (+) |
trnat-ugu_12 | NA | coding | upstream | 240913 | 26915358 ~ 26915430 (+) |
hhipl1 | hhipl1,LOC107668615,LOC107740569,LOC103460662 | coding | upstream | 242114 | 26903639 ~ 26914229 (+) |
vrk1 | vrk1 | coding | upstream | 737136 | 26405390 ~ 26419207 (+) |
tdp1 | tdp1,LOC102776284 | coding | downstream | 259312 | 27726878 ~ 27760866 (+) |
kcnk13a | kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 | coding | downstream | 300702 | 27768268 ~ 27773076 (+) |
hmbox1a | LOC108270414,LOC108437743,LOC107751802 | coding | downstream | 313902 | 27781468 ~ 27793212 (+) |
pnoca | LOC108270041 | coding | downstream | 400674 | 27868240 ~ 27881903 (+) |
map7a | LOC108270039 | coding | downstream | 446838 | 27914404 ~ 27927660 (+) |
G172097 | sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 | non-coding | upstream | 182401 | 26973696 ~ 26973942 (+) |
G172114 | NA | non-coding | upstream | 187927 | 26967610 ~ 26968416 (+) |
G172118 | NA | non-coding | upstream | 188807 | 26967332 ~ 26967536 (+) |
G172099 | NA | non-coding | upstream | 196105 | 26867117 ~ 26960238 (+) |
LOC117598329 | setd3,LOC107588283,LOC107668608,LOC107583493 | non-coding | upstream | 316865 | 26803056 ~ 26839478 (+) |
LOC113533960 | NA | non-coding | downstream | 27336 | 27494902 ~ 27531363 (+) |
G172405 | foxn3 | non-coding | downstream | 97740 | 27565306 ~ 27568639 (+) |
G172414 | NA | non-coding | downstream | 114152 | 27581718 ~ 27673480 (+) |
G172422 | foxn3,LOC107680774,LOC107751738,LOC107755777 | non-coding | downstream | 154907 | 27622473 ~ 27652164 (+) |
G172408 | NA | non-coding | downstream | 166366 | 27633932 ~ 27636361 (+) |
LOC113534148 | NA | other | upstream | 1725414 | 25426891 ~ 25430929 (+) |
samd4a | samd4a | other | upstream | 1838066 | 25258811 ~ 25318277 (+) |
LOC117598238 | LOC108191637 | other | upstream | 1978446 | 25176374 ~ 25177897 (+) |
G171329 | NA | other | upstream | 2148577 | 25003983 ~ 25007766 (+) |
cx28.6 | LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 | other | upstream | 2155724 | 24994493 ~ 25000619 (+) |
trnak-uuu_7 | NA | other | downstream | 257641 | 27725207 ~ 27725279 (+) |
LOC113533782 | cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 | other | downstream | 560434 | 28028000 ~ 28071081 (+) |
brms1la | brms1l,brms1la,LOC107682295,LOC107693096 | other | downstream | 1393896 | 28861462 ~ 28935700 (+) |
kif28 | kif28p,LOC108270380 | other | downstream | 1586667 | 29054233 ~ 29138878 (+) |
G173221 | mrpl57 | other | downstream | 1602154 | 29069720 ~ 29073089 (+) |