pacrg (pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953)


Basic Information

Item Value
gene id pacrg
gene name pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24629095 ~ 24767416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926144.2
TATAACTGGTGCCTAGCAACGGCAGTGTGTCCTTAGCAACCCAAACAGGAGCTTCAGCGGTGTTATGGTGTTTAGAGAAGCAAATTTATTACCCAGCCACTGATAAGTTTCATTCTAGCGGTTTTGCTCGGCATTCGACGTCTACAAACATGAGAACTTTTGATGGAACGAAAACAAAGCTGAAGACGGAAGGATTTACGGTGAAATCAACTATGAAGAACTCGGTGGTGGTGGGTCCTCCTGCAGCCGGAGCTTTCAAAGAGCGTCCAGCCAGACCCACGTCATTCCGGAAGTTCTACGAACGTGGAGATTTCCCAATTGGGCTGGAGCACGACACCAAGGGCAATCGCATCGCCTGGAAGGTGGAGATTGAAAAGCTGGACTATCACCACTACCTGCCGCTGTTCTTCGATGGTCTGTGTGAGACGTCTCACCCGTACGAGTTCTTCGCCCGGCAGGGTGTACACGACATGCTGGAACACGGCGGCACCAAAATCCTGCCAGTCATCCCTCAGCTCATCATCCCCATAAAGAatgctctgaacaccaggaacaaGCAGGTGATCTGTACCACGCTGAAGGTTCTGCAGCACCTCGTCGTGTCAGGAGAGATGGTGGGAGAAGCTCTAGTGCCGTACTACAGACAGATCCTGCCCATCCTCAACATGTTCAAGAACATGAACACAAACAGTGGAGATGGCATTGATTATAGCCAGCAGAAGCGGGAGAACATCGGCGATCTTATTCAAGAGACGCTGGAGGTGTTTGAGCGCTACGGAGGAGAGGATGCCTTCATCAACATCAAATACATGGTGCCCACTTATGAGTCCTGTCTATtcaactaacacacacacacacacacacacacacacacacacacacacacacacacactactgctaCACCTGAGCCTTATACTCCACCTGTATGACATTATTAATCTGGTCACCTGATTCATCCTATTATTCTACTGAGTATCCTTTGTCTTAATGAAACATTAAAGCCTTTGCTCTGATGCCACTGTGTGTGTCCTCGCTTTAAAAGTAAAATCATAAAGTTCAGAACCTCAAATTGTAACAGCACAAATACTGAATATACTCTGAACTGGAATATTCACAATAAAGCTGCAAATGCACCAAA

Function

symbol description
pacrg Predicted to enable Hsp70 protein binding activity; Hsp90 protein binding activity; and chaperone binding activity. Acts upstream of or within determination of left/right symmetry. Predicted to be active in cytosol; neuron projection; and vesicle. Is expressed in several structures, including Kupffer's vesicle; axis; forerunner cell group; nervous system; and pronephros. Orthologous to human PACRG (parkin coregulated).

NR:

description
parkin coregulated gene protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926144.2 True 1140 mRNA 0.47 5 24629095 24767416

Neighbor

gene id symbol gene type direction distance location
ptafr ptafr coding upstream 67817 24554583 ~ 24561278 (+)
trnar-acg_3 NA coding upstream 199433 24429590 ~ 24429662 (+)
trnah-gug_13 NA coding upstream 199620 24429404 ~ 24429475 (+)
trnae-uuc_2 NA coding upstream 200844 24428180 ~ 24428251 (+)
trnar-acg_2 NA coding upstream 202068 24426955 ~ 24427027 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding downstream 15587 24783003 ~ 24861032 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding downstream 280254 25047670 ~ 25055250 (+)
ptger2a LOC108269911 coding downstream 347361 25114777 ~ 25132890 (+)
LOC117598271 LOC108191637 coding downstream 404129 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 439420 25206836 ~ 25238591 (+)
G171121 NA non-coding upstream 137886 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 179028 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 311029 24317534 ~ 24318066 (+)
G171019 NA non-coding upstream 319129 24309630 ~ 24309966 (+)
G171017 NA non-coding upstream 320766 24307854 ~ 24308329 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding downstream 305330 25072746 ~ 25076475 (+)
G171413 NA non-coding downstream 367184 25134600 ~ 25134885 (+)
G171430 LOC108191637 non-coding downstream 408410 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 421749 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 504433 25271849 ~ 25279677 (+)
kdm1a kdm1a other upstream 146241 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 1606700 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2809036 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2862722 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2954634 21669907 ~ 21674461 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 227077 24994493 ~ 25000619 (+)
G171329 NA other downstream 236567 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 408958 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 491395 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 659475 25426891 ~ 25430929 (+)

Expression


Co-expression Network