LOC113533835 (dlk1)


Basic Information

Item Value
gene id LOC113533835
gene name dlk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23979390 ~ 23982635 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926208.2
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttcataaAGCACTGTGCGTTTATGCTTGCTGGATTTATTGCTGCTCTGAGAACAAAACTCTATTCAAGTCGCAGGAGCACCGAGATTAAATGGATCTTCTTTATTGTGCGCATTAGTGCTGTGCAAGATTTCTGAGCTACTTTTCGTGCTGATGCTGAAGGTGCCACTTTGTTGATTCGGAGCGTTGTGCATGTTTGGACGGAACGAGAAGAAGAAAGCATTTGGAAGTGCGTTATTTCAGTCTTGAGTGTTTGTGATGAGAGGGAACTTTGCGTAATTGAGATGTGCGTCAGGAGCACAAGGACTTAACCCAAACCTGAGGATGTATATGTGTGGATTTCTGAGCCTGGCGATTTTATGCTCAATTCTGCTCGGATTTGCTGCACTTGGCAAAGCTGCAGAATGCGAATCTGGGTGCAATCTTGACAATGGGGTCTGTGACAATGGAGAGTGCAGgtgTAACCCTGGCTGGCAGGGTGCAACATGTGAGCAGTGCATTCCTTTCCCCGGCTGCGTTCATGGAACATGTGAAAAAGCTTGGCAGTGTATGTGCGAGCAGGGTTGGGTGGGCAGTCAATGTAACCAAGACAGCCATCTGTGTTCATCAAAGCCTTGTTCTGGCAATTCAACCTGCATCGAAACAGAAGAGGGTGGATATCTCTGTATCTGTCCTCCTGGATACACAGGCAAAAATTGCCAGCTGAAGAAAGGACAGTGTTTATTGAATGGctcTCCGTGTCAGAATGGCGGAACCTGTGTGGATAGTAATGGATCTGACAGTCACTCATCTTGCCTGTGTACTCCCGGATTCACTGGAGATTTCTGTGAGACTGGTGTTGACGCTTGTGAGTCCAACCCATGTCTAAACGGCGGAACATGCACTGATCATGGACTAGTCTACACCTGCATTTGTCCTCCTGCTTTCTCTGGCCCCATCTGCAACATTACTCTGGCTTCATGCTCTGACAGCACCTGTAGGAATGGGGGTACCTGCTTAACTGAGACTAGCAGTGGAACTCGATGTATCTGTCCGCCCGGTGTAACGGGACCTTTGTGTGACATTCAAATCCATGAATTCAAAGCGAAAGCCAAGTTTAAACCACCAGACCTAGGCCATCCTCCCCAGCATTATAGCCTCCCTGCTCATCCTTTCAACAAGCTGTTGAAACACCCTGAGCATGAGTTCCTAAAGATCACCAAGAAAGAGTCGGTGCATGCCTCTAGTCCGCTGGTCACACGTAGCCAGGTTATCTGCTTTGCGATTTTGGGTCTGCTCACCTGCCTGGTGGTCTTGGGTACCACAAGCATCATCTACTTCAATCGCTGTGAGACGTGGCTGGCAAATGCGAAGTATAGCCAGCTTATGCGCAAACAGAGAAACTTCCTCCTAAGGGCCAACGACACGGAGCATTCTGTACATATCATCCTGCCTGAGAAAATTAAACTGACCAATTATGGGAAGCACTACACAACCATATAACAGCTGGACCACCAGACACTTGTTCTTGGGGTTTTGTGAGCAACAGACTATTGTTACTTGTTTAGATGTTGTATATGAATATTAGGTTAATTAGGGTATGGGTCTTATTGGGAAATGTttaggaaaatatttatttcagggGCTAGGAGTAGATTTTTGTAGATTATATATTATGGTTGCATACAGTAATTACAATCATGTGTACATTCGTAGCTCtgtctaaataaaaacagctcttcATATCAGTCTTAACAATTGAAGATGttatattttcacaaatttgGTTAGTGATAAAATACCACATCTAAATagtaaacttaaaaaaaagcaaatttggATCTCTGTATTGACACACAGAACTTGTACTGGTAGGAGAACAAGGATAATTTGAAACAAGCCTCTTTGTACAGCATAATTCAAAGAAGTATATACCTCATTATaggtttattataattatagtaATTGAAAACCACAATAACATGTTGAATGGGAGCTGTTATGAGATATAAAACcattaattgattaaaaaatatgtata

Function

symbol description
dlk1 Is expressed in head.

GO: NA

KEGG:

id description
K24461 DLK1; protein delta homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926208.2 True 2050 mRNA 0.43 5 23979390 23982635

Neighbor

gene id symbol gene type direction distance location
trnay-aua NA coding upstream 14284 23965034 ~ 23965106 (+)
trnah-gug_11 NA coding upstream 14471 23964848 ~ 23964919 (+)
trnah-gug_10 NA coding upstream 17335 23961984 ~ 23962055 (+)
wdr25 wdr25 coding upstream 69755 23894848 ~ 23909635 (+)
slc25a47b slc25a47 coding upstream 95668 23879309 ~ 23883722 (+)
ctsba ctsb,LOC108433939,LOC107733172,LOC107592770,LOC107752788 coding downstream 6123 23988758 ~ 23998042 (+)
pomca pomc coding downstream 250723 24233358 ~ 24235125 (+)
dnajc27 dnajc27,LOC107752776,LOC107733160 coding downstream 256022 24238657 ~ 24246890 (+)
xdh xdh,LOC107592779,LOC107733164,LOC107752765,LOC107594783 coding downstream 270226 24252861 ~ 24282623 (+)
zgc:162964 NA coding downstream 312971 24295606 ~ 24307018 (+)
G170718 NA non-coding upstream 150204 23827063 ~ 23829186 (+)
G170716 NA non-coding upstream 197301 23779323 ~ 23782089 (+)
G170717 NA non-coding upstream 200163 23778269 ~ 23779227 (+)
G170610 NA non-coding upstream 603952 23375238 ~ 23375438 (+)
G170568 NA non-coding upstream 829306 23149542 ~ 23150084 (+)
G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding downstream 27714 24010349 ~ 24011349 (+)
LOC117598313 NA non-coding downstream 45690 24028325 ~ 24034062 (+)
G170904 NA non-coding downstream 53149 24035784 ~ 24036171 (+)
G171017 NA non-coding downstream 325219 24307854 ~ 24308329 (+)
G171019 NA non-coding downstream 326995 24309630 ~ 24309966 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 956995 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2159331 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2213017 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2304929 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 3448168 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 480831 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 1011858 24994493 ~ 25000619 (+)
G171329 NA other downstream 1021348 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 1193739 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 1276176 25258811 ~ 25318277 (+)

Expression


Co-expression Network