smyd2a (smyd2a,LOC108269891,LOC108433938,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111)


Basic Information

Item Value
gene id smyd2a
gene name smyd2a,LOC108269891,LOC108433938,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24003465 ~ 24028482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926229.2
TATACCGTAAACCTTCTGGCTAGCTGTTTGTCTTCTTACCATGTGGTGTGTTGGGGAGTGTTGCTGGACTTTCTGCAGTTATTATCCTGAAATCCACTGAACAGACACTCAACTCTTGTTCACGAAGGGTACTTCAACGACTTTACGTTTATAGCAGTGCAAAGAAGAAGTGCTAGTCGTGAAGGAGACGATCCCAGAATGAAGTCGGAGGGGATTGAAGGCTGTGAGAGATTCCTGAGCCCTGGGAAAGGCCGAGGGGTCAGAGCAACGCGGCACTTCCAAGTGGGTGACCTGGTGTTCGCCTGTCCGGCGTACTCCTACGTCCTGACAGTGAACGAGAGGGGCGGCCACTGCGAGTTCTGCTTCACCAGAAAGGATGGGCTGTCCAAGTGTGGCAAGTGCAAGCAGGCCTACTACTGCAACGTGGAGTGTCAGAAAGGAGATTGGTCCATGCACAAGCTGGAGTGCTCTTCCATGTGTTCATATGGAGAAAACTGGTGTCCCTCCGAAACTGTGCGACTGGTTGCTAGAATCATCGTGAAGCAGAAATTCCAGACAGACCTGACTCAATCTGAAAGATTGTTATCCCTGAAAGAGTTTGAATCACATTTGGACAAGATAGACAATGAGAAAAACGAGATGAACCAAACTGATATTGCTGCACTCCATCACTTTTATTCTAAGTATCTGGATATTCCTAGTAATGCTGCTCTTGCAGAACTCTTTGCCCAGGTGAACTGTAATGGTTTTACCATTGAAGATGAGGAGTTGTCTCATTTGGGCTCTGCAGTCTTTCCAGATGTTGCTTTGATGAACCACAGCTGTAATCCAAATGTGATCGTGACTTATAAAGGTACAGTAGCAGAGGTCCGTGCTGTTCAGAAAATCAGCCCTGGAGAGGAGATTTTCAACAGTTACATTGACCTCCTGTATTCCACTGAGGACAGGAATGAGAGGCTGAAGGATTCATACTTCTTTACCTGTGATTGCACAGAATGCACCACCAAAtcaaagGACGAGGCCAAAATGGAGATTCGGCAGAAGCTGAGTACTCCTCCAGAGCCCGAAGAAGTTCAGGAAATGGTGAGGTATGCCAAGAATATCATTGAGGAATTCAGGAGAGCCAAGCACTATAAGACTCCCAGTGAGCTGCTAGAGATCTGTGAGTTAAGTCTGGAGAAAATGGGATCCATATTTGTTGACACCAATGTGTACATGTTGCACATGATGTACCAGGCCATGGGTGTCTGTCTCTACATGCAGGACTGGGATGGAGCCATGAAGTATGGCGAGAAAATAGTGGAACCCTATAGTGTGCATTACCCTCAGTACTCTCTCAATGTGGCTTCTATGTACCTGAAGCTTGGCAGACTTTACATGGGACTTGAGAAAAGAACACAAGGAGTGAAAGCTTTAAAAAAgGCTATTGCCATCATGAATGTTGCATTTGGAAAAGACCATCATTACATTGCTGAgataaaaaaggaaatggaaGAGCATAAGTAAAGAGAGGACCTCTGTAAATTCAAGAACAGCTGTATGGCATGCAACTAATACCTCTGCTTGCATACAAACTAACGTTTGTTTCTCTTTGATGTCATTTTGaggttttggtttgtttatttgtttgtttgttttacaaatgATTGCTGACCTGGGTTCTTGACATTGAGGTGCTGGTTCTGTTAGCTGTCCGTACTATGAATAAATATGCACTGTTTGTGTGAGCAAGggctaataattaaatattaaatatacttgTCCTAAAGATtgtcttaaaaatatttctttaacttCTTTGCCATACCATTCATCAACCACATTGTAAAAATGACTGTTTGCTTGGCCACAGAATTTACCAATGATTCAGTAACAGCATATTTGGATGAGTATTTAACACGACTAAAGACGCATATCCCTGATTCTAATTATTGATCGTCTAGATAGTATGGCATGAAAGATTGCCTTTGTTTCATGCCAAAGCTCTATATTGTCTATAAAGCCTACACTAGGTCTTTAACAACTTTGCAGTTTTTGGTAccataaaaagataaataaattggTTTTCTAACATTTTGTAGGGTAATGTTAATGCTTAGATTTgtgaatataattatttttttttgactacTATTCTATGAAGTAGactactctaaaaaaaaaaaaaaaaaaaaaaagttatagtTTGTCAATACGTTATTGTTCAgtaacacactgacagacattaaaaaataattgtctAGTAAAATAACAGATCAggtatacagtggggtccaaatgcCTGAGACCATTAGcaaaaatgcttctattttatattcttttctaactaaaaaaaaaaaatcattagaagCAACAACTTAAGCGAAAAGTAGAATCATGAGCTCTATTTGGATTCCATCTCCTTGGTGATAAAACTCTTGCAGCCGGACAGCAATAAAATTATCACAGGAAGTACTGATGGGTTGTATTTCCCCAGAAATCCCAGACATTTGCATTATGTGGTCATATGATTACGCTTCTTTCACAACTTGGAGTCCAACTGGTCGAAGAGGCACAGGATTAGAAAAAAGATGGCTTTTTTCTAATctggctcttatttcagtttggcactggctcttatttcagtttggggTGAACTAAGGTTCCAGCAACAAAATTACAACTCGTAATCACAAAGTATGGGAGTCAGTTTGGACGAGAGTTTGTGAGTTCTGTCCTTCCGTCTGCGCCATGTTTGACTGGATCAAGGGTAAAGAGCGTATTATCTACTTGAAGTGAAAGTACTGCGAATGCTTGAAACACAACCAGAAGACACTGACACTAAGCGTTGCCCGTTCTATGAAGAAATTGAATCTGTCCTGGGTAAGCAACTTTAGCATTTTAGTCTACTCTTGTTTAattcggacacaatatggccaaatgttttgtttatttttgaaggggctacactcactttatagcttGACAGCTacctggctagctagctcatattgatttgtacattcccattaaaggtgcttccaaTGAAATTAACTTCCTTCTTCATTTTTATCTTCAtatgatgagctttcatattttaagtcaaaagttatattcatgaaaaatgtatcgtGTCCGTGTCTGCTGATGTGGAATTTCTTGTGGTGAACACACAGTCAGAGTGATAAAAGTGAAACTTTCCAGTGcggttataataaatataagcactcaTGGAATGCAGCTCggccaatcaaattagtggaccggaactaactgttgtacaaatattaaatattaaatttttcagaattctaaaactttgtttatttccagttttaaatctGGTCTCACACTTTTGTACCCCAGTGTATAATTTACCTGTTTAAGTTGTCTGATCTGATATTTTAGTAGTCAATCTAAATCAGGATGCACACTTGTATGCTCTGTCAGAATGGCTACAATTCTACACTTTTAATCTGAAAAACTATACCAATGATGCTAAAGCTAAAGTTCCTGCACCTAACTGCACTGAAGACATTGAATACCATCGATGTTGGCCATGCCAAAATATTGAGgatgttatttatgtttatagttGCTTCCTGATGGAGGATTTTGGGTAGATCCGGAAAGTCTGAATAGAATAGTCTTTAAACAAACGcattatttggaaaaaaaatgtagcagcaggtgaaaaaatgacagaaaaatgcagtagtgaatataaagaaaaacatgaattttTCAGTAGCAGAAATATGCAGAAACTCCCAGGCAGTGAGAATCTCTGGCACCTACACATGGACAACAGTAAGCTCTGTTGTTGGGACTAGAAACTGAATAACTTGTGTATTTAACGTACCCAAAAGCAAATGACTTCTAATGAGGTGATGACCAAGAATATTAAAGCATGTATTTGTCATTtccatttacagtaaataaagacaccttaaagaaaaa

Function

symbol description
smyd2a Predicted to enable RNA polymerase II complex binding activity and histone methyltransferase activity (H3-K36 specific). Acts upstream of or within several processes, including caudal fin development; heart contraction; and regulation of sarcomere organization. Predicted to be located in cytosol. Predicted to be active in nucleus. Is expressed in heart primordium; muscle cell; and somite. Orthologous to human SMYD2 (SET and MYND domain containing 2).

NR:

description
PREDICTED: N-lysine methyltransferase SMYD2-A-like

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0010452 histone H3-K36 methylation biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0043516 regulation of DNA damage response, signal transduction by p53 class mediator biological_process
GO:0060047 heart contraction biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000993 RNA polymerase II complex binding molecular_function
GO:0046975 histone methyltransferase activity (H3-K36 specific) molecular_function

KEGG:

id description
K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926229.2 True 3939 mRNA 0.39 12 24003465 24028482

Neighbor

gene id symbol gene type direction distance location
LOC113533700 begain coding downstream 52429 23919138 ~ 23951036 (-)
wars1 wars coding downstream 110826 23884755 ~ 23892639 (-)
LOC113534026 slc25a29,LOC107687216,LOC107557018 coding downstream 126508 23869091 ~ 23876957 (-)
soul3 LOC108269867 coding downstream 166693 23827048 ~ 23836772 (-)
LOC113534104 klhl28,LOC106581578 coding downstream 211321 23780015 ~ 23792144 (-)
prox1a prox1,prox1a,LOC108433936,LOC107594785,LOC107674077 coding upstream 12263 24040745 ~ 24078739 (-)
LOC117598332 NA coding upstream 258360 24286842 ~ 24291965 (-)
LOC113534192 ect2l coding upstream 278517 24306999 ~ 24320497 (-)
ccdc28a ccdc28a coding upstream 298461 24326943 ~ 24331095 (-)
tmem121aa tmem121a,tmem121,LOC108270236,LOC107674105,LOC107592808,LOC107697696,LOC107594772 coding upstream 335520 24364002 ~ 24380106 (-)
G170887 NA non-coding downstream 4754 23995566 ~ 23998711 (-)
G170866 NA non-coding downstream 84442 23918425 ~ 23919023 (-)
G170852 NA non-coding downstream 109110 23894124 ~ 23894355 (-)
G170788 NA non-coding downstream 224231 23777979 ~ 23779234 (-)
G170805 NA non-coding downstream 226154 23776555 ~ 23777311 (-)
G170936 NA non-coding upstream 6026 24034508 ~ 24034898 (-)
G171028 NA non-coding upstream 219203 24247685 ~ 24248015 (-)
G171056 NA non-coding upstream 255527 24284009 ~ 24284401 (-)
G171160 NA non-coding upstream 390449 24418931 ~ 24494790 (-)
G171175 kdm1a non-coding upstream 439741 24468223 ~ 24469486 (-)
greb1 greb1 other downstream 823954 23148743 ~ 23179511 (-)
G170435 NA other downstream 1139698 22855494 ~ 22863767 (-)
G170023 NA other downstream 1887589 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 2883840 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 3186026 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 461756 24490238 ~ 24544079 (-)
G171256 NA other upstream 752800 24781282 ~ 24926224 (-)
G171569 NA other upstream 1230357 25258839 ~ 25259362 (-)
G171734 NA other upstream 1550457 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3536776 27565258 ~ 27652301 (-)

Expression


Co-expression Network