ptger2a (LOC108269911)


Basic Information

Item Value
gene id ptger2a
gene name LOC108269911
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25114777 ~ 25132890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926373.2
AAAGGCAGCTCCGAGCTCATTCAGCACGAGCGCGCGCGTGAACATCACCGCTGGAGGGACAGCTGttcactttgtgttttttaaaaagcaaaaatggataaaacgtcACGTGAGCTGATTGTGTATCGCCTGTACGGACTCAGCGCGTGTTTACCGGTGCGGTTTTATTTCCGTTTCGGTTTTATGAAGTTTCAAGTGTAGAGTTTGTAACTTCTCTTGTAACGTGTGTGACTCTAATCTACACGCCGTGGTGTCTTCAGGGGCTTCAGGCTCCATGGAGGCGAGCTGTTGGATTTTGACGCTTTGAATAGCctgtaaacaaaaataataataataaaataaaagtatttagtGGTTTTGAATGGACGTTATGCAAACGGGGAACAACCAGACCTGTCATAACACACGGAACGTGGAGATAAACGCGAGCCCGGTGATAAGCGCGCTCATGTTCGCGGCGGGTGTGCTGGGCAACGCGACCGCGCTCCTGCTCATCGAGGTGCGGCGACGGAAAGAGCGCAGCCGCAAGCAGCACGAGCATCACCGGCGCACCTTGTTCCACGTGCTCGTGACCGCGCTTGTGGTCACCGATTTGGCGGGCACGTGCTTGATCAGCCCTCTTGTGCAAGCCGCTCACGCGCTCAACACCACGCTGACTGCCATGAGCGACAACAGGAGCGCGTGTCACTACTTCGGCTTCGCCATGACTTTCTTCAGCCTGGCCACGCTGTCGCTGCTGCTCGCCATGGCGCTCGAGCGCTACCTCTCTATCGGCTACCCGTACCTGTACGGGCGGCGCGTGAGCACGCGCTGCGGCTACGTCGCCATCCCGTGCATGTACGCGCTGTGCGCGCTCTTCTGCTGCATGCCCTTTGCGGGGTTCGGCAGCTATGTGCAGTACTGCCCCGGCACCTGGTGCTTCATCGACATGAACCCCAAAAAGAGCGCGGACCGAGTGTTCGCCAACGTGTACGCCACCGTCATGCTGTTCATGGTGCTCGCGGTAGCCGCGTGCAACTGCTTCGTGGCTTATCACCTGGTGCTGATGTACCGAAGGCGCACGCTAAACCGCGGAACCTCGGTCACGCGCAGCCGGAAGGACCGAAGacccttttctctctcacaggaGGTGGAGTATCTCATCCTGTTAGTCATCATGACAGTTATATTTGTCATATGCAGCCTTCCCTTAATGATCCGAGTGTACATTAACTCTATGCAGAATTGCAACGAGAGCAAGACTGACCTTATCGCGCTACGCTTCATCTCCATCAACTCCATCATCGACCCGTGGGTGTTTATCATCCTCAGCCCCTCTAGGCTACGTTTCCTTTTGGGGGCACTGTGCAAGGCCGGAAGCAGGAACTCAATCTACAAAACCTCGCTGGCCAAAAACTCAGAAGGGCAGCTCGATCAGTGCCAAAACATCACCGCTGAGATCACACACCTGAGCAAAGCTGCTCAGATGATATGACGAAGGATTTTacttgaaactgaaaaaaaatgtatttcccAAACCCCGAGGATGCACTTGGGATTCCCAGATGTTGTAACATCAGCAGAGGGGTTTGGtgagattgtgttttttttttccaaaggcTTATTTAGAGTCCCCAAGAGTCAGGCCATTTTGATTGGCAGAGAGATACGAACTCCATGGTGACTGAGGCCTGGAAAGGTTGTTgctgtcgttgttgttgttattgttgttgtgttaGAAACCactaaagtaaatgttttttttagagtaaagaCTGAATGTGCTCagctcttaaaaaaaacaacatgactgACGACATGACGTATGTCATTCCACAGGACCATCAGGATAAGTTACATGTGTTGCATATGAGAAAGTGGCCTATTGTGGTGTGTTTTACTGCTAGAAAAACATCTAGGATAGACAAATGGACCAAGTTTGTTCCATAAAGTTGATTTGCGTGCATGCATCACCCCATGTTGCCTCTTTTATGGTGCTTAATGGGGAATCAGTGGAACATGTAGTCTCTTTTTCTAAAGCAAGTCATGCGAGTTGTAGACTTCATGGAAAGATCAATAAAGCTAAACTGCAGAGACGGATCATTCTTATGTCGTTAAGACATAAAGCGTTTATTGAGAGTTAATTGCAGTGACACTGCGTCAAATGTTCATCTGCCCTTAAGCTGTCGTGCTAAATTGTGAATCTGTTATTAATTTAAACGGGAGTTACGAATTTCAGACCATTTGTGTGCCAATGTGTTCGTGTTTTAATGTCGTATGTATGATAATGTGCTGAAAATGTGTTGTACAAATTCATGTGTATTTCAGGAAGCTGATATATGGGTTCAAAATGTACCTCATTTCATGCAGTACTGAGATTGCATTTGCACTGAGCTGTGAAAAATGTcaagcttgtgtttgtgtgtgcgatTAATACAATGTATGAAGCATTGTTGTGAAACTATGGGTCAGGTTTGTTTGACTTCTGTCAGCAGCATTAATAAGTCCACAGAGTCacaaggcagaaaaaaaaaagtttgatttatCACCAGAGCTGTAATATTGTGTACTATTGAAATactctggttttttttttttttttttgtttcactaCAAACGGATTTGTTTTTGCTGGCATTCCCATTGGTTCCACCACCAAAAATCTATTGGACTGAAACCGAACATCTGTTGATGCTGGCGGTTTTGCAGATTTTTACAAGAAACAGCAAAATCACATCCGTGAGTCACCCATCTGAGAAAAACAGTAGGAATGTTTAATATCATAATCAGAACTGTATGCTACCTTGTCAGGCACGTGATTTCGCTGTTGCTGACGCCATTTTCGGGACCAAATTTCTGCCTTCCCTGCAAAACACGAATGTAACCAGAGATGAAAGATTACAACTTTATTTCAGAAGAGAATAAACAGTACTTCTTCAAAGCCAA

Function

NR:

description
prostaglandin E2 receptor EP2 subtype-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04259 PTGER2; prostaglandin E receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926373.2 True 2925 mRNA 0.46 2 25114777 25132890

Neighbor

gene id symbol gene type direction distance location
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 59527 25047670 ~ 25055250 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding upstream 253745 24783003 ~ 24861032 (+)
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding upstream 347361 24629095 ~ 24767416 (+)
ptafr ptafr coding upstream 553499 24554583 ~ 24561278 (+)
trnar-acg_3 NA coding upstream 685115 24429590 ~ 24429662 (+)
LOC117598271 LOC108191637 coding downstream 38655 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 73946 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 248822 25381712 ~ 25388660 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 336568 25469458 ~ 25489162 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding downstream 357385 25490275 ~ 25494255 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding upstream 38302 25072746 ~ 25076475 (+)
G171215 NA non-coding upstream 314719 24759612 ~ 24800058 (+)
G171121 NA non-coding upstream 623568 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 664710 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 796711 24317534 ~ 24318066 (+)
G171413 NA non-coding downstream 1710 25134600 ~ 25134885 (+)
G171430 LOC108191637 non-coding downstream 42936 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 56275 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 138959 25271849 ~ 25279677 (+)
G171522 NA non-coding downstream 255882 25388772 ~ 25389166 (+)
G171329 NA other upstream 107011 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 114158 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 631923 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 2092382 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 3294718 21819281 ~ 21820059 (+)
LOC117598238 LOC108191637 other downstream 43484 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 125921 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 294001 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 2023453 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2592317 27725207 ~ 27725279 (+)

Expression


Co-expression Network