fut9a (fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789)


Basic Information

Item Value
gene id fut9a
gene name fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25651808 ~ 25660655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926505.2
cgcgcgcgcaaGAGGACTACAGACGCATTTGCGACAGATAGTATACACAGTGACATGTCTGCTCATCAGGGTTCACATGTCATGCTCGGAGAGGCAGGGAAAGAGCATGGCTTGGAGATGCTGGCTCGGGGCTTGCAGTGTTAGCCCACCTTGGCTGGGTTCTCACTCGCATGCGCGTGCTGTGTGGGAGAGCTGCAGAGATGGAAATGGACggatgatgctgctgctgctgctcctttCTCTCCTCTAGGCTTTCTCTCAGCCAAACCAAGGCGATGGGACCTACACTGAGAAAACTTTCCAAGACTGGACCAAATGAAGATTCAAATGTGTTTAACTCTTCATAGCTACATTTTGCTTTGttactgttgaaaaaaaaaacaaaacaaagaattgGCCGAAGCACCTGCTTTGCAAAACCCTTTCTGAATGACTGCAAAACTACCAGGCCAGAGTATGCCATCTGCACCTACACACAGGATTCTTCGACCCCTCCTGCTTGGCACCTTCTTACTGGGCTGTTTTGTGACTCTGTTTTTGATGTACATCAAGCCGTCCACTAGCTGGTTATCGGGCCCTGTTGAATCAGAAACATCCACGGCTCGAGTAAAGAGCCTCCTGTCCAACAGAAGTGAGCAGAACCAGACCACAGTGCTCGTCTGGCTCTGGCCATTTGGGGAAACCTACGACCTGAACGTGTGCAGCTCCCTGTTCAGTATCGACAACTGTTTCATAACCGCCGACCGCAACCTTTATAACAAATCCGATGCAGTCGTCATCCACCACAGGGACATTAGCACCGATCTGTCCAACATGCCGCCAGCATATCGACCTCCTCTGCAGAAATGGATCTGGATGAACCTCGAGTCGCCATCGCATTCATCCCAGTTACCTGGCATCGAGAACCTGTTCAACCTGACCCTAAATTACCGTCAGGACGCTGATATTGAAGTGCCTTACGGCGCCATTGTCGCCTCCCAAGGCGAGGAAAGCTTTGTGCCACCGAGCAAGAGCAAGTTGATCTGCTGGATCGTGAGCAACTGGAACCCGGATCATGTCCGAGTGAAGTACTACAATGAACTGTACAAGCACGTGGAGATCCACGCCTATGGCCAAGCGTTTGGTGAGTACATATCGGACCAGGACTACTTCCCCACCATCGCCAGCTGCAAATTCTACTTGGCATTTGAGAACTCGATTCACAAGGACTACATCACGGAGAAACTGTATAACCCGCTCTCAGTTGGCACGGTGCCAGTAGTTTTGGGCCCACCGAGGGAGAATTATCAGAATTTTGTAGAAGGCGATGCTTTCATCCATGTGGACGACTTCTCCTCCCCAAAAGAGCTGGCTGATTATCTTTTATTTCTGGACAAGAACGAGGAACTTTACTTGAGGTACTTTGACTGGCGTAAACACTTCAAGGTAAAGAAAGCCTATTTCTGGGCTGAACACACTTGTCTTGCGTGTGATTATATCAGAAGACACAGCGAGTACAAGGCGTTTAATAATCTCGACAAATGGTACTGGGGTTAATCTGGATatgctgattggttgattggttgGAAATGATATAAAAGGTTGATACCATATTTTCCAGGCTATAAGACACATTTTACCCCTTTAGAAGGTAAGACTAATACAACAAACTGCCATGTATGTTATAATTTTTGTATGTGCCCATTTGGGAGTCATTTGATGGTAGACCTGCCACTCCAgcttttctttaagaaaaagtTACATTCCCAGTGTTAGCTTAGAGTTAACATAACAGTGAAAATCTTTGTAAGGATGGACATAAGTCTGCTTTACACTGTGTGACTTTCATCATTGGTAGTCATGGTTGGCTGTACCAGGCTATTACCAGGCTGTtagattttaatcaaaattatCATAATTGCCTGGAGGACAAATAGGTTCAAAAACCAGATCTTTATTGATTTTCGCAAAACAAATGTATCGTTTGGTgtgattgtttaaacaaaatgGACTTTAGGGAATGTTACTTAATCCcactgcctgctgcactacacacatcagctgtgGTGTGATAATAAACAGTTACCTTACATTTAAGCATATTTTGACAAAATAAAGAGACTAGCCAGAGTCAAATAACGTTTACGTGTAATACAAGGTGGAAAAATCACAGCTCGTAGCCGAAACATTGGCCAATGACTTGCTGACATTTTGTTAAGAGTGGAAACCCAATGTGCTACCCAATGGCAACCAAACCACAGGACTAGACAGCAAATTGGAGCTTCCATCAATAAATGTATCACTGCACTGATATCACACAATCTGCCAGATTTTATTGGCATCATGTTGTAACACACTATAAACCTATAAAACCATCGTTACCGCACAGTGTAAAGCAGACTTTAGAGACATTTTTAGGCATTACAGAGGGATTAAGCTCAAGGCTAAAGCAAAACAGCTCAGATAGTGTATATAGCTGAACTAGAGCAATACAAAAACTAAACTTGTTTAATATGAGTTCCATTTCAGAGGTCATGTATTTTCATTTAAGAAAATTCAATTACATTGGTTGCTGATTTAGTTCCGCTTTCACAGTGAAGCACAAAGAATTTTAGGAACGTGTCTCATATGTAAGTGGAACTTATTGTCCGGAAAATATGGTAAATCGATACGAATGAGGATCAGCGTTATCTGCTTAGACTGCTctggtttatttttgtaaaatgaagtggatattaatttattttgatagTCATGCTGAGCACTttccatatttattaatttgaatgCAGAgaacatattttattatgtgATAACCTTTGtgactgttttgttttcttattgcCTTATTTATCATGTTTCACATTTGTCGATGGTGATTTTAAATTGTCATTCCACGTTCACATCCGACTGACTAAACCATAAATTACTCCAACTGAGAAAATAAGTGTTGAATAGGAAATAgctgtgtattatttatttcactacGATATAGTGTAGGTGTGGTGTTTGTCAAGTATGCAGTGTTTACAGATCTGTGAATTGTGTATGTGTTGTCCATTGCTGTAATTAGTGTAGTgtctagaattttttttggtcataatTTTCTTTGGATCTTACTTGCACAGTCACGAAAGGCCAATGACCTTGCTAAAGCATCAGCGCACtgttattactttttaatcAGCCACAACGTGCGCTTTCATCAACAGCTCAAACTCAAATGCTACTGTATAGTGTTATATCAATATACGTCGTAACAAACAACACGTCatcatacatcagaaatgtcatcttttgaaattttttaaaattaggaGTGTATGGAGAGTTGACAATGtgaacagttttactgtaatacTACATACTAGGGCTGCGTCGATACTGATTCTGACATTTCTGATACTAATACATCCGATACCAGGTGATGCTAAGTGACTTAAGCCTAGTGCATGTGGTTGCGCTAAACAACAAGCAATAGATCACAATTAATGATCAAAGCAAAagaaagcagactgcaaactgtgctctgtgaaaatatcaagaggagaaactacagcatcttcctacaatacaagtaaccttataaaacatcttaaacataaaaataagcacaaggagttcattgctagcagcacagAGCAACACCCAACACTGCAGCAAATGGTAGCTAGGGcaagaaaaaatgtctacataaaaaaaaaaaaaactaaaacaacaaATCATACATTATTTACAGCTGCACGGCTTTTTCCGAAGTGAAACAAACCCCGCTGTTCTTCATTGCAACCCTACTCGAGCTAAAGttactaatgtagctagctaattcactTAAAATCAGCGAGCTAACATCATATAGTGCAAGTGTAGCAGCTTAAGTGCATGAATATGCACATTATCATGGTGTATATGTAAACCAGGGAAACAAAAACAGTGCTAAATAACATGTCCTGTGATGTCCCTGATTGGTTAATGCTAAGTATTCATCTTCGTATGATTTactcatttctttaaaaattccCTCCGGCTGCACCAGTTGGAAAGCAGTGGTTTATTGCTTTTAAGTTATATGTCAGTGATTGTTTAAAAGGAAAGAACAAAGGGAAGTCCTACTTCGGAGAAGTCAGGTTTATGATATCCGGATATAACTTCAATTTTCCAAACAGGACAACATCCATCtaaaagtgacatttttgttCATCGTTAATTATAATTTGAGTACATGTATGGCAGATGGCTGTTCATATTTCCTGTGGACTCTGTGCCCCTTGGTCGTGCATGTCCTCATAAATTAACACTACGTCTAAATATCAACATAATTATTTCTTTCCATTctggtgtgtgtgaacattCTGTCCACTCCGTGAAACCCACAGTACACCAAAAATCTGAATTGTGTTGATGCCGAAAAATATAGATCGCCTCTTCAATCAGaacaaaatgcaattatttCTTGAGCGTCTAGATCAATGCACACTGtgcacacatttgtttttcttttaaaagcttagatacattttaataaatcaataaatcgtTCACCTCAAAGAACATTAGAAAATGGCGAACGTCTGCGAAATTGGTGTATTGGCCTTATTGTAAGGCGTGGCTAATATTCATACATTTCAGTTACATAATTCTGTATTTTCTCTAATAAAAGTGAAGTACTATATTGTTACTTAGCCTACTAGCCTACTACTGCAAAATTCAGCAACGGCTAAATTCAGTGAAAGAAACAGTTGCCAAATTGTATGCACTGGTATAGCATAATatttttgtagcattttaaattttttttttttttaaggttttccAATCACACCATTCCATTATCACACTCCTGATTTAAATgctgtgctattttttttttgtctagcagtgtgaaaaatatgaaatgaagaGCACAAGTCCATTATGCAAATGTAGGCATGTGTGTGGGACtgcacaccactcacacacatttgtaaGAGCTTATGATATGAGGTCTTGTTTTTTGGGGGACATTAATGAGAAAGTCCATGGACTTTTATTGTAGATATTGTTCTTATGAAGAGAGAAATGTAGCTCTCTACTACTCTATTCATAAACACTAGCTTAGCAAATGTGTTCAGTGCCAAAGCTTTTCCCttgattgtttttctctgaTCTACTTTTACTGTGAAAGGCTATTTTTGGATTAGTGTAATCTAACAAGTACTGTATGAtacatttacaaagaaatatcATATGGATGCACGCACATTACTAAAGCGCTGTGCTTTGTGTTCTAATTTTAGTTCACTGCGAATGGGAGATTCCACGATTGCGCTGGCATTTAGCCCTTTTCAACATTGGAACTaacaaaacatgcatttaatcattcaaaaaGATGTGTCAGCCCATCTCAGGCAACTATCCTGCTGcgtttttgctcatttttaatcataaaattgGCAAAATGACACAGTGTGTTGAACTAGCATCCATGAATGTTAAAGACTTTCTAGTgatttgcttaatttttttaaattaataatttaatttgtctCTAATCTGGGTAACAGGATTGTACAATTCAAAGAAACCGCaccagtcaatatcacaatattgtc

Function

symbol description
fut9a Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Orthologous to human FUT9 (fucosyltransferase 9).
fut9 Enables 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity. Involved in several processes, including fucosylation; positive regulation of neuron projection development; and regulation of leukocyte tethering or rolling. Located in trans-Golgi network membrane.

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG:

id description
K03663 FUT9; 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926505.2 True 5570 mRNA 0.39 3 25651808 25660655

Neighbor

gene id symbol gene type direction distance location
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding downstream 11587 25634727 ~ 25640221 (-)
si:ch211-266g18.9 LOC108270005 coding downstream 17925 25620016 ~ 25633883 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding downstream 59065 25587488 ~ 25592743 (-)
fyna fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790 coding downstream 77687 25557409 ~ 25574121 (-)
LOC113534087 LOC108270379 coding downstream 96245 25534732 ~ 25555563 (-)
manea LOC108270006 coding upstream 3683 25664338 ~ 25669975 (-)
cx52.7 LOC108269563 coding upstream 18659 25679314 ~ 25680741 (-)
LOC113534079 LOC108269777 coding upstream 652154 26312809 ~ 26321625 (-)
si:dkey-288a3.2 LOC108270389 coding upstream 702411 26363066 ~ 26403989 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding upstream 1080719 26741374 ~ 26794919 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 142188 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 181734 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 261937 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 359870 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 362306 25287152 ~ 25289502 (-)
G171755 NA non-coding upstream 112849 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 317141 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 397590 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 934626 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1111477 26772132 ~ 26773050 (-)
G171734 NA other downstream 69281 25578939 ~ 25582527 (-)
G171569 NA other downstream 392446 25258839 ~ 25259362 (-)
G171256 NA other downstream 725584 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1107729 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2472297 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1904603 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2010968 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2238827 27899482 ~ 27910890 (-)
G172919 NA other upstream 2251582 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 3137494 28798149 ~ 28860011 (-)

Expression


Co-expression Network