ccdc85ca (ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728)


Basic Information

Item Value
gene id ccdc85ca
gene name ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26846846 ~ 26898308 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926508.2
CACTCTGCTTCAGCAGGCTCGCTAAGTGCTGAGAGGCAGTCTCTCTACCTGCTCGCGCggtggtgtgtgtatgcgtgtgtatgcgtgtgtgtgtgtgtgtataaaccgCTCTCTACACgtttctctgttttttaaaGCTTCAGTCACACAtctggaggaagagaggaaatgTGGAAGAGACCCCTGTTTCAGAAAACGGTTATGCATGACCAGAAAGTCTAATTTCACCTCACCGGACTGAAGAGCTGACCTTCCAGGACGAAGGATTTCAGAGATAAAAAAGCAGGAGTTATCAGTGTTATTTCGCTTAACAGGTTTCCCACTTCTTGGATTAATCTTCAATACCATGGGTGTGATTTTAGATCTGCTGCATTTATGTAGGCATCATTAGATATCCTTCAGCTTCTTCTCACAGCCGTCCATCCACGGAAAGGAATATGGCAAAAAATGTGACCGACGTCCCAAGGGAGGATTTAAGCAAAATCTCAGACGAGGAACTCCTCAAACTCAGCAAAGATGAGCTGGTTCGAAAGCTCCGTAGAGTCGACAGCGAAAAGATCAGCCTAATGGTGGAGCACGGGAACATGATGCGAGATGTGAACCGGAGACTACAGGTTCACCTTCACGAGATCCGGAATCTGAAAGAAGTGAACCAGAAGCTGCAGGACGACAACCAGGAGCTCAGGGAGCTGTGCTGCTTTCTGGACGACGACCGGCAAAAGGGCAAAAAGCTGTCGCGGGAGTGGCAGCGCTTCGGCAGGTACACGGCCAGCGTCGTCTGGAAGGAGGTCGGATTCTATCAGCAGAaactgaaggagctggaggTCAATCAGGAGGCCATCATGCACGAGAACGTGGAGTTAAAGGAGATCATCGTCAtgctggaggaggagaggaatgGCGCCGGGTCGAGGAGCTCTATAGACAGCCAGTCCAGCTTGACCAACCTGAATGGAGGCACGAATAACGTGAGGGACGTGGGGGATGGAAGCAGTACGTCCAGTACGGGAAGCGCTGGAAGCCCAGACCACCATCACGGTCACGGGCACAAACCTGTCGAGGGCAAGGTGGCAGCCATCAGAAGATCTATGGATGATCTATCGACTAACCACCTCCACAGGAGCATACCAAATGGACTGAACGAATCCTCGAATTACATCCGTCAGCTAGAGACGAAAGTCCGGATTTTAGAGGATGATAACAAGCAGGTTTTCTCCCAGggGAATGTTGGTGATTTGAAGACGTTGAAGAAAGGCTTGTCGTTGTATCACTCCGAGTCCCAGCTCTCTGCGCTTTCCAAGCAGCAAGACGCCTTACAGAACGGCACTGCTCGACTCCCGGGTGGAGATCTGCCCTCGCCCATCACCCCCTACATGACGTCCTCTCAGAAACCCGAAGCTCTGGTTCATGCCATGAAGGTATTGGAGGTCCACGAGAACCTGGATAGACAGATTCCTGAGGACTACGAGGAGGATctcagtgagaaagagaaagctaTCGTGAGGGAAATGTGTAATGTGGTGTGGCGTAAGCTCGGTGATGCAGCAGGCTCCAAGCCGTCCATCCGGCAGCATCTCTCTGGAAACCAGTTTAAAGCCCCGATGTAGCTCCAGCCTCGATCAGCACACACCAACACGCCAGTCCGTCCAGAACCAGCGCAATTTCAGAGCACTTCAGAAAGCAATCAGAGTACAAACCTGCACTCCTATGGCTCCATGCCGGCAGCCATGTTTTAGCGTACATTAGGGTCCATGCAGTCAGCACAAGCTGACTTTACacgctgattttttttttgtccactcATCTAAACAGGATTTAAGGCAGCTAGTGGTATCCATTACCTAATGGACGTTGAGACTGGTTTTAGTTAGAAATCCTGACTTTACACTCCACCAGCAATGGAGCTGGTTCACTCAGTCGTAAATGATCCTAAAGCATTAAGACCTACTTCAGGAGAATAAACCATCATGAAGGACGGATGCGAAACGAGATGTAGCAATCTACCCTCTGTTCCTCCTTTCTCTAGAGAGGTTTACACAAGTACACGCCAGGATTGCTTCACTCCTTTTCGTCTGCttccatttttatgtattttcccAAGATATAAACACTTGGTGTTAGAAAGAAACCAGTCAGTGTTTTCTTAACCCAAATAGACGTCCAGCATATGAAAAACAGCCCTCTTTGGCTGTTGAGGACAAATTATGGGCGATTATTTTCATTAGGACGAACTCCATCTCAGTGTCATACAGTGTCTCACTTTTAAGGCATTTTATTTTAGACCAATTTGACAATCGTTTGTAAATGATAAACTATTAAAATCCTAAAGCTATATGATCTTATGCAGTTAGTCCCTTTAACACCGGGTAAGGTAGCTTAGCATTGGCTAATTATGTGGTCTTGAGTAAAAGCACTCCTGTACTAATGAAGCTTTAGATCCAGCACAGACGTCTGAACCGGGGTTTGTTACTGAATTCTGTCTCAGCAAAACAGTACGAAGTCTTAATGTTGTCTGAAAACACGTAGCTGAGTTGTTTACGTTGTGAGACTAGCCGTACgttcacactaacaaacaacaaaacgaCAAAGAAACCGTTCATTTTTGATCAAGCGACATTTGCATTGAGATTTTATCAATTCTATACAAAGTAAGTATGACGTGGTTatgtgacaaatccaaacgattggtTCAAATGATTCCTCATCCTTGTGGTGTAACGTTTCTTAAAACTTATAAACGCTATATCCTGAACTCTAATTAAATGTTTAGagagacattacgaagaaacataaagcttggaaggaagtagcagaaaACGTTGGTGTCTCTGATGAGTACGTAGCTAGCACTGAATACACAGCTAGTTCGAGCCCAGACACGTAGCGTAAATCAAGTAACcagttttcacactgattaatgtgttatttcatttgtgttaatcaggttagctttagaagctaaatatagctactactgtttctcattggaactaaaacaaacaaactcaaaaAAGAGGCAatgcccacaagagacaaactacaagcgacacACAGTACTAGTGTGAACGTAAGGTTAGGACTGGTTTATGAGATCTCTAGACAAACGTTCTGTCGTACATGTACATGAGATTCAGCAGAGTCAGGTATGAAGTTTTGTGTAGATGAGGAAATTTGTGCTGTTTAAAGGTGCGGTTTGTAATTTGCTAGAGTTTCTATTATATGTAATCATATTTCAACGATATGAAAACTGtgtttgaaatatgaaaatattgatTCGCATTGgatctctttgtttttttttttatttcaggttttaatttacacttttctggccctgaaatagGCTCCGCCCCAAGTGGAACGGAGCTACTCAGGCCAGATTATGCCCATTTTCTGTAAAAAGGAAACTATTGATGTATTTGTTGTTTTACCCAAGCAGGTGTGTTGATTGTAAAGTTTTGATTGCAGagctctaaaaatgacaaactgcacctttaacatCTTCACTGCGTATGGAAGACTCGGTACTGCCACAAAAGATATTTGCTGCATTTGTGCAAAGCTCTAACCAGAATGTTTAAAGTCTCAATGATGTAACTGTAAAGTCTCAATGATATTTTTCCTTGCTCTGATTTTTCAAGATTTTTCTCTCGCAGAAGATAACGAGTAACGTGTGAGGATTTCACTTCCGGCAGCTCAGGGACTTTTGCTCATTGCCGTCGTCATGACAAGAACGAGTGCGGGGACAGTGAAGAGAACGTCTCATAGTCACATGACTAACCTTAATTCCATCAGAACGTCAGATCTTTCtgaatatttgtgtatttttttacacaaatatgGAGAAATGTGAATGTAGCATAGCGCTGTGttacaaatatgaacaaaacacCAATATATATCATTAGCATCAGCCTTCAGAGAGGAGGTTTTCTACTTAAAGCTTTAAACGACTGGCTGTAAATTTAGAAAAGTATACATTgggtataaataaaatcaaatctagAGTGTGCCTCATGAATAAGTCCTTCAATACACAGATGTAGACaccaagtaaggaataaaacacttcggggcatgctgttataggaaaataatcaactttcagGTGATGTAATGTGGCTACTACCCTGAagttattttcctacaacagcatgcctTGAAGTGTACAGAAATgtacaacttttatttattaaagaactacatgttgtactttttatccgtttatcgttacatttaatattttgggaaaaattAGCTCcggttctcacttacattatagcagctataaacagtcccttcaccagcctctttttttccactaagacaaaaaaaagcagcttgtcatgttctcGAGAAACCAGAGCTCCTCCGTCCTGAAAAcctactgacactggagactccttcctcgaatgttaaacaaacatctccttacagaatcatatcaatgattacatatttttaagtcttttttttttttttgccagtttaTGCACAGCGTCCACGATGCAAGTCCCTtcgtaagctgttactatagaaaccataacgcatcaacaccttctaaccaatcagaatccagaatttatcAGCGCCTTGGGTTTATCGTTATCTGTAGCATGATGAGTgactgaaataaattaaaacagctTTTGGCTGGCAGTGTAGCGTCCAAAATATCCCAGAATTCTGTGTTTGGAGCCCCGAAGGAAAGAGTTTGACGTGAATGAGTCGGACGTTTCTGGAACATCAGCAGCTCTCTGgctcacaaacaaacacacacacacacacacagtaagagcACATGAGCAAGGAGGAAAGGAAGCATGAGCAAAGTTCTTAATTGAAGTACAATAATTCGAGAAGccataataatttttttgtatttttaattacttcAGAGAGAAAAGGTTTTGCAAAGTCAGAAATTTCAGATTCTCCTTGTTGTAAAAGCACTTTATCGGTGCTGCTCTGATATAAAGTCAGatgaattttgttggtttctTCTTGAGCCAAGATGCAGCAGGTGGCTTTTGGCAgtcttgtgtgagtgtgtgttttaattttttttttttttttatgtctggGATGTGACTGAACAAAAACGAGCAGCAATCatttgaaagattaaaaaaaaatagtttctaTTTTGATATTTCtatgaaaaatgaaaggatGCTCTAAAAGATGAGCGGTCAACATTTGAACTATTTTTTGGGGGGGAGGAAAAAGTGTCCTTCCTGTCCAAGTAGTCTAAACTactgactcttttttttaatatttgttaatttgaaaacacaaaagaaaaaaaaaatccatgaatCCCAGACTGCTATTTTCCTAACCTTGCTTTCAAATGCACTGCTTCGTTTGTGAGCGAGgaggtgatgtgatgatgtgaagaTCTCTAACTCGAGTCTGTGTTTGTGCCACCTGAGCAAACTGTTGTAGGAGATCTCGCTGTGTAAATACCTCTTTCCTGTAGAATATCTGTAACTAGCAtgcctttattattattattataattttttttcataagaacTGTGCTGTAGGTTTCATTTAGGAAATGAAAAGCCGTCGAGATGAAACTCAGTGCACTTCCTGTAGatgattgaaaataaaatgtacactctTTGTAAA

Function

symbol description
ccdc85ca Predicted to be located in adherens junction and bicellular tight junction. Predicted to be active in apical junction complex. Orthologous to human CCDC85C (coiled-coil domain containing 85C).
ccdc85c Predicted to be involved in cerebral cortex development. Located in adherens junction.

NR:

description
PREDICTED: coiled-coil domain-containing protein 85C-A-like isoform X3

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926508.2 True 5637 mRNA 0.42 7 26846846 26898308

Neighbor

gene id symbol gene type direction distance location
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding downstream 1711 26818900 ~ 26845135 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 51927 26741374 ~ 26794919 (-)
si:dkey-288a3.2 LOC108270389 coding downstream 442857 26363066 ~ 26403989 (-)
LOC113534079 LOC108269777 coding downstream 525221 26312809 ~ 26321625 (-)
cx52.7 LOC108269563 coding downstream 1166105 25679314 ~ 25680741 (-)
ism2a ism2,LOC108413947,LOC107583490 coding upstream 31353 26929661 ~ 26955838 (-)
sptlc2a sptlc2 coding upstream 61515 26959823 ~ 26989620 (-)
alkbh1 alkbh1 coding upstream 100123 26998431 ~ 27003962 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 584573 27482881 ~ 27489113 (-)
ston2 ston2 coding upstream 630555 27528863 ~ 27557994 (-)
G172207 NA non-coding downstream 17117 26829318 ~ 26829729 (-)
G172196 NA non-coding downstream 73796 26772132 ~ 26773050 (-)
G172016 NA non-coding downstream 251363 26595281 ~ 26595483 (-)
G171874 NA non-coding downstream 788337 26058245 ~ 26058509 (-)
G171864 NA non-coding downstream 868819 25977796 ~ 25978027 (-)
LOC113534208 NA non-coding upstream 18510 26916818 ~ 26920537 (-)
G172225 NA non-coding upstream 80158 26978466 ~ 27052034 (-)
G172635 nrxn3 non-coding upstream 567564 27465872 ~ 27491804 (-)
LOC117598276 NA non-coding upstream 866297 27764605 ~ 27768101 (-)
G172782 NA non-coding upstream 889014 27787322 ~ 27787728 (-)
G171734 NA other downstream 1264319 25578939 ~ 25582527 (-)
G171569 NA other downstream 1587484 25258839 ~ 25259362 (-)
G171256 NA other downstream 1920622 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2302767 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3667335 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 666950 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 773315 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1001174 27899482 ~ 27910890 (-)
G172919 NA other upstream 1013929 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1899841 28798149 ~ 28860011 (-)

Expression


Co-expression Network