hhipl1 (hhipl1,LOC107668615,LOC107740569,LOC103460662)


Basic Information

Item Value
gene id hhipl1
gene name hhipl1,LOC107668615,LOC107740569,LOC103460662
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26903639 ~ 26914229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926532.2
CCTTGAAGAGGGTTGGCAACGCTGTGGGACCTGGAGGTCTGCGAAAACAGTGGAGAAGAAAGCGAATACTCTTTGCAGGAAGTATTTTTTCCCTCCCGAAGTGGTGGGAGTGTAAAAACAGCAGAGACACCACGCCAGATCATTTACATGACAAACTCTCCGTGCACTTCTGCGGTTCAGCCCGTTCAAAGTGCAGTGAGGACAGAAAGCGCACTGAGCCTCTTACATAACTcctgcatgcatgtgtgtacgtgtgtgtgtgtgtgtgtgtgagaagtgaagtgaagtgaagtgaacaGAAGGCTCTGATCAGAGGAAGCACAATGCGCCGTCTGATTTTGCTCTGGTTGTCGGGATTGTTATGGTTCGCACCTGTGCGCTCTCACCCGCAGTGTTTGGACTTCAAGCCGCCGTTTCAGCCGCTGCAGGAGCTGCAGTTCTGCGCCATGTACAAGCACTTCGGCTGCTGCGACTTCGCCAGAGACCAGGAGCTCATGAAGAAGTTTTACCGCATCATGGACAACTTCGACTACTACGGCTATGCGAACTGTGCCGGGTACGTGCAGGACCTCCTGTGTCAGGAATGCTCACCATATGCTGCTCATCTTTTTGATGCTGAAGATCCCAGTACACCGCTGAGATCCATTCCAGGACTCTGTCCAGACTACTGCTCCACCTTCTACTCTAAATGCAGATCCACTATCCCTCTGCTATCAGACAACCCACGCCTGTCACAACTAGAAAAGGACCGCACCAGACTCTGTCAGTATCTGGAGCTGGAGGATTCAGACTACTGCTTCCCTCACGTACTGAGCAATGAGGCCTTAAATAAAAACCTGGGACGCGTCACAGCGGATACAGATGGCTGCCTCCAGCTGTGCTTGGAGGAAGTAGCTAACGGACTTAAGAACCCTTTAGCTATGGTGCACGCCAACGACGGCACCCACAGGTTCTTTATCGCCGAGCAAGTCGGCCTGGTTTGGGTGTATCTTCCAAATAAGTCGAAGTTGGAGAAGCCGTTTCTGAACATCACGAAGGCTGTGCTGACGTCTCCATGGGAAGGCGATGAAAGGGGATTCCTGGGTCTTGCGTTCCATCCCAGGTTTAAGTACAATGGAAAGCTGTATGTCTACTACTCTGTCGAGGTAGGCTTTGACGAGAGGATCCGAATCAGCGAGTTTCGGATCTCTGCTGCGGATATGAACGTTGTTGACCATACTTCTGAAAGAGTTATATTAGAGATTGATGAACCTGCCTCGAATCACAACGGAGGCCAGCTGCTCTTTGCTGATGATGGCTACTTGTACATCTTCACTGGCGACGGTGGCATGGCCGGAGACCCTTTTGGAAAATTTGGGAATGCTCAGAACAAGTCTGCTCTGCTGGGTAAGGCCCTCCGCATCGACGTGGATGATAATGAGAGGGGGCCGCTGTACAGAATCCCTCCTGACAACCCGTTTGTGCATGAACGTGACGCTCGGCCTGAGGTGTACGCCTACGGCGTGAGGAACATGTGGAGGTGCTCTGTGGACAGAGGTGACCCTCTCACCAAGGAGGGCAAGGGACGCATCTTCTGCGGCGACGTGGGCCAGAATAAATACGAGGAGATAGATCTGGTGGAGAAAGGCAGGAACTATGGCTGGAGAGCAAAAGAAGGCTTCTCCTGTTATGACAAGAAACTGTGTGCCAACAGCTCTTTAGacgATGTTCTTCCAATTTATGCGTATCCTCATAAGATGGGGAAATCGGTAACAGGAGGATACATCTACAGAGGCTGTGAATACCCCAATTTAAACGGAATGTACATATTCGGAGACTTTATGAGTGGaCGCTTGATGAGTCTAAAGGAGAACCGTAACACACACCGATGGGACTACAATGAGATCTGCATGGGCTTGGGCCGGACCTGTGCCTTTCCAGGCCTCATTAACAATTACTACCCATATGTCATTTCTTTTGGTGAGGATGAAGCAGGTGAACTCTACTTCCTGTCTACTGAAGTTCCAAGTGCAACGTCACCCACTGGGGTTGTGTATAAAATCGTCGATCCATCACGACGTGCTCCACCTGGAAAATGTCATTACACCCCCCTTCCAGTGCAAGTCAAGAGCAAGCTTGTAGCGTTCAAGCCAAAGGAAACATTAATTGGCTTTGAAATGCCAACAAAACAACCACCACTCTCAGAAACGGATGAGTTTGGAGCCAAACCAACAGAATCTCCGCATGAAACAACGAAAGATTGGATTCAGGAGTTGTTGGACATCCTAAGactggaggaggaggacatCATGGGTAAGACCACACCATTTCCGACTACTGaacccaccaccaccaccaccaccaccaccaccgccACTCCTAGACATTCCCGTAAAGGCAGACGGAAAAAAGGTAAGAAGTTTGAAAATGGTGCTGTGAGACTGATGGGAGACGAACAAGGCCGGAAAGACCGTGGCAGAGTGGAAATCTACGCTAATGGAGAATGGGGGACCGTCTGTGATGATCTCTGGTCCACCCGAAACGCTGCAGTGGTGTGTCGACAGCTAGGATTCAGCTACGCTCTCAAAGCCTACGGATACGCCGAGTTTGGGGAAGGGAAGCATCTGAGGATACTTCTGGATGACGTGCAGTGTGAGGGTACAGAGGAAACCCTTCTGAAATGCCAGCACGCAGGTGTAGGCGTACACAACTGCGCTCATCACGAGGACGCAGGCGTCGTATGCACCAATTCAGAATACGTTGAATATTAGCATTCAGGACGGCCTCTGTGTGAAGTACTGATGGAGGAAAGAGACGTAAACCATGAAAAAGTAGCACATAGGTCTACCTCATCAActgaaataaaaggaaatgtcACAATAACTGTTAATGAATGTGTAACTGGCCGGATCATGTTTAATGAAGcaaatacatttatatgaatttttgtattatattttaaaataaagtaattatataaattaa

Function

symbol description
hhipl1 Predicted to enable catalytic activity and scavenger receptor activity. Located in cytoplasm. Orthologous to human HHIPL1 (HHIP like 1).

NR:

description
HHIP-like protein 1

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0048038 quinone binding molecular_function
GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926532.2 True 2964 mRNA 0.49 9 26903639 26914229

Neighbor

gene id symbol gene type direction distance location
vrk1 vrk1 coding upstream 484432 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 543548 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 555299 26334822 ~ 26348340 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 569583 26323399 ~ 26334056 (+)
LOC113534080 NA coding upstream 591132 26307077 ~ 26312507 (+)
trnat-ugu_12 NA coding downstream 1129 26915358 ~ 26915430 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 89880 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 93705 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 812649 27726878 ~ 27760866 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding downstream 854039 27768268 ~ 27773076 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding upstream 64161 26803056 ~ 26839478 (+)
G172052 NA non-coding upstream 113832 26789523 ~ 26789807 (+)
LOC117598331 NA non-coding upstream 216913 26625940 ~ 26686726 (+)
G171684 NA non-coding upstream 1124907 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 1310890 25587489 ~ 25592749 (+)
G172118 NA non-coding downstream 53103 26967332 ~ 26967536 (+)
G172114 NA non-coding downstream 53381 26967610 ~ 26968416 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding downstream 59467 26973696 ~ 26973942 (+)
G172352 NA non-coding downstream 419175 27333404 ~ 27333880 (+)
LOC113533960 NA non-coding downstream 580673 27494902 ~ 27531363 (+)
LOC113534148 NA other upstream 1472710 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1585362 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1725742 25176374 ~ 25177897 (+)
G171329 NA other upstream 1895873 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1903020 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 242114 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 810978 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1113771 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1947233 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2140004 29054233 ~ 29138878 (+)

Expression


Co-expression Network