LOC113534010 (fbxo33)


Basic Information

Item Value
gene id LOC113534010
gene name fbxo33
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28722659 ~ 28729487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926568.2
GCTGAGCAGCTCGgtggtgtttgttgttgttgttgttgttttgtgtagcGGTGATTTGTCTTCGCCCCGCCGCTCCCGGTGTAACGTTTAGATAAAGAGCTGGGTCTCCTGCATCTTCTCAGTTCTGTGTGCAGTGAGACGGTAGTGACGGTAGACGGTAGACGCAGTGCCATGGCTCTGCGCGGCAGCGTCGGGGCCTCGGCGTTACCCAGCGAGCTGATCGTCCACATCTTCTCCTTCCTGTCGGAGCGGGACAAGCTGCGGGCCTCCGCCGTGTGCACGCGCTGGAGGGAGTGTCTGTTTTACCCCGCGCTGTGGAGCGAGCTCAGACTGCGCTTCGGTACCGGGATCGGAACTGGAACCGGaccaggatcaggatcaggacCGGGAGCGGGACagggatcaggatcaggatcaggatccGGACCGGAAGAGGACACCCCGAGGCTCGAGTTCCTCATGCGACGGTTCGGTTCGTTCGTGCGCGAGCTGCAGCTGGAGTTCGGGCCGCTGGACGCGTGCGGAGGAGAACCGCAGAGTCACGAGCGCTGGAGAACCGCAACGCTCACCTACCTGCAGCACGTGCTGTGTGTGCTCAGCAACCTGAGGAACAACAGGAACCTGCAGAAGCTCAGTGTGTACGGAGACACGTTCGTTCTTCAGGACGATGTTCAGCAGGACGGCTCTTACCTCAGCCAGGTCGACCGGGGAGGCAAGAAAATTAAAGAgatccAGCAGCTGTTTGAGGACTTCCTGTCGAACAGCAGACAGTTGAAGTGGCTCTCGTGCTCCTTCATGCCGGGTGTTTTAACCCCACACTCTCTGTCCTCGCTGTCCAACCCGAGCGCTGAGACTCTGCAGCACCTGAGTCTCCTGGACCACCAGACGTCCAACCTGCTGCTGTCCTCAGAGCTGCAGCGTCTCTCCAACCTGCGCTCGCTCTCCATCGACTACTGCGACTTTACCTCCTCCATGTGCCAGCTGTTAGCGGACGCCAACCGAGCGCCGCTGTTGCGTTTATCTCTGCTGCTGAACGGCACCACCCTGGAGGCCCGCTCTCAGGACTGCACCGCATCCGAATCGGACCTGGGGGCTCTGACGAGACGAAACACAGACCTGCGAGTGTTCCTGATGGCGCTGGACGTGTGTGATGAAGTGCTGGAGAGCGTCCTGAAGCCCAGCTTGCCCCTCGAGCGGATCCACGTGGACAGTTACATCGCGCCGCTCAGCGACACCGTCCTCGAGCGGGTCTCACTCCAGTACCACAAAACGCTCACACACTTCGTCCTGACGAGAGACGACGGACGATTCCCCGACCTCAGCGGAAACAGAAACGAGGACCCGCTGGTGCTGCTGGTGTGGCGTTGTGTTCATCTCTCTGTGCTCGTCATCCACGGTTACACGCTGTGGGCTCACAACCTGGTGGCCATCTCTCGGCTGCGTGGCTCGAGTCTGCGCGTCCTGGACGTTCCGGAGGAGAGCATCGACTTCGACCCGGAGCAGGCCCTGTTCTCGACGGGCGACCCGGTGCAGACGCTGGTGAAAGAGGTGTCGCAGGGTCTGGGCCGCGCCTGGCACCCCTCCGTCACCACGGAGAACAGCGCCATCATCAGCGACCCCATGCTGCACTTCCACCGCGAGATGCAGAGCTTCAGCGAGAACGTCTAGAACGTctagattctctctctctctctctctctctctctctcaccgttcctttcttttttttttttccctagtgtgtgttaat

Function

symbol description
fbxo33 Predicted to act upstream of or within SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex.

GO: NA

KEGG:

id description
K10310 FBXO33; F-box protein 33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926568.2 True 1750 mRNA 0.60 5 28722659 28729487

Neighbor

gene id symbol gene type direction distance location
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 31257 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 36408 28680699 ~ 28686251 (-)
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding downstream 199063 28481500 ~ 28523596 (-)
ccdc175 LOC108269708 coding downstream 483067 28225649 ~ 28239592 (-)
LOC113533755 gpr135,LOC107564991 coding downstream 507092 28211620 ~ 28215567 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding upstream 6831 28736318 ~ 28742071 (-)
nfkbiab nfkbia coding upstream 38988 28768475 ~ 28772162 (-)
lrrc57 lrrc57,LOC107682003 coding upstream 138184 28867671 ~ 28877881 (-)
il17a/f2 LOC108269798 coding upstream 152765 28882252 ~ 28885109 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 186889 28916376 ~ 28928895 (-)
G173255 NA non-coding downstream 5988 28715522 ~ 28716671 (-)
G173240 NA non-coding downstream 54439 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 165378 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 377892 28344439 ~ 28344767 (-)
G173025 NA non-coding downstream 498772 28181197 ~ 28223887 (-)
G173274 NA non-coding upstream 28291 28757778 ~ 28758906 (-)
G173282 NA non-coding upstream 131914 28861401 ~ 28862608 (-)
G173289 NA non-coding upstream 133421 28862908 ~ 28864167 (-)
G173268 NA non-coding upstream 136426 28865913 ~ 28866675 (-)
G173292 NA non-coding upstream 141983 28871470 ~ 28871955 (-)
G172919 NA other downstream 810115 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 811769 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 996902 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1070358 27565258 ~ 27652301 (-)
G171734 NA other downstream 3140132 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 68662 28798149 ~ 28860011 (-)
G173287 NA other upstream 107405 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 171417 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 506432 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 516482 29245969 ~ 29329076 (-)

Expression


Co-expression Network