alkbh1 (alkbh1)


Basic Information

Item Value
gene id alkbh1
gene name alkbh1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26998431 ~ 27003962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926575.2
ACGTCGAGAGTTGAAAGTTCGTAGGTCAACGATGACAGCTAAGATGGCGGCTTCCATGGTGGAGCAGGGCGAGGATGCATTTAGAAAACTGTTCAAGTTTTATAAACGGAGAAATCCGCCGCCGGATTTTAGTGACGTCATTGATTTTTCCAGGAAAGCAGGAAACGAACTGGTTTATGCAGCCGAATTGAAGCATGGCAGTGTCAGCGAGGAAGCTGCTTTCAGAGCAGGACTTCAGCCTGTTAAAGAGTGGAGAGCGTTTGGGCTTCAGGGATATCCAGgGTTTATATTCATCTCTAATCCCTTCCTGCCTGGCTCACAGCACTACTGGGTCAAACAATGTCTGAAGACCTACACCCAGAAACCCAACGTGTGTAACCTGGACATGCACATGTCACCTGCTGAGACGGAGAACATCTGGGAGAAGAGCGTAGGCAGCTTTTGGAAGAAAGGGCAGAGGGAGCCGAGGACTCTGCTGGAGAAACTCCGCTGGGTGACTCTGGGTTACCACTACAACTGGGATACTAAGACCTATTCTCCTGATCACTACACTCCTTTCCCTGAGGATCTCCACTCTCTGTCCCACAAAGTAGCAGCGGCTTGCGGTTTTCCCGGCTTTAAAGCAGAGGCGGGAATTCTGAATTACTATCGCTCCGACTCCTCTCTCGGCATCCACGTGGACGAATCGGAGCTTGATCATACTCGACCTCTTGTGTCTTTTAGCTTTGGGCAGACGGCCGTCTTCCTGCTGGGCGGGACTAAACGGCAGGACCCGCCCACCGCCATGTTCATGCGCAGCGGTGACATCATGGTGATGTCGGGTTCCAGTCGCCTGCTGTACCACGCTGTACCCTGCATCGTTCCCGCCCCCGCCGGCCACCCCCTGCCCACCTGCCTGGACCAGCGTGTTGTCAAGGACGAGCTGAACAATGGAATCATCCAGACTGTGTGTGAAAAGGACTGGGAGGTGTGTTCTACTTACCTTAAGACGTCACGCATAAACATGACAGTCAGACAGGTCCTGGGTCCGGGTCAGACCTTCCccgtcacacactcacacactgttacaGCGAAAGAACAATCCAGAAGTGGCTATGAGGAGGAGACTCAAACGGCTAAGAAGAGGAAAAGCGAGACAGGATATGACCTCGATTCATGACCTACATCTCAGTTTTGGACTTTAAGGGGTATTTATGTGATCATAATTTTGGGTTTAAAAGCTGTATATATGTGAATAAAACATATTCCAATCA

Function

symbol description
alkbh1 Predicted to enable ferrous iron binding activity; oxidative DNA demethylase activity; and oxidative RNA demethylase activity. Predicted to be involved in oxidative RNA demethylation and oxidative single-stranded DNA demethylation. Predicted to act upstream of or within DNA repair. Predicted to be active in cytoplasm and nucleus. Orthologous to human ALKBH1 (alkB homolog 1, histone H2A dioxygenase).

NR:

description
nucleic acid dioxygenase ALKBH1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG:

id description
K10765 ALKBH1; alkylated DNA repair protein alkB homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926575.2 True 1253 mRNA 0.51 6 26998431 27003962

Neighbor

gene id symbol gene type direction distance location
sptlc2a sptlc2 coding downstream 8811 26959823 ~ 26989620 (-)
ism2a ism2,LOC108413947,LOC107583490 coding downstream 42593 26929661 ~ 26955838 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding downstream 100123 26846846 ~ 26898308 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding downstream 153296 26818900 ~ 26845135 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 203512 26741374 ~ 26794919 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 478919 27482881 ~ 27489113 (-)
ston2 ston2 coding upstream 524901 27528863 ~ 27557994 (-)
kif13ba kif13b,LOC107583481,LOC107755780 coding upstream 790458 27794420 ~ 27842196 (-)
znf395a LOC108270040 coding upstream 879037 27882999 ~ 27892310 (-)
tfb1m tfb1m coding upstream 1053600 28057562 ~ 28087407 (-)
G172212 NA non-coding downstream 38815 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding downstream 77894 26916818 ~ 26920537 (-)
G172211 NA non-coding downstream 127812 26870347 ~ 26870619 (-)
G172207 NA non-coding downstream 168702 26829318 ~ 26829729 (-)
G172196 NA non-coding downstream 225381 26772132 ~ 26773050 (-)
G172635 nrxn3 non-coding upstream 461910 27465872 ~ 27491804 (-)
LOC117598276 NA non-coding upstream 760643 27764605 ~ 27768101 (-)
G172782 NA non-coding upstream 783360 27787322 ~ 27787728 (-)
G172784 NA non-coding upstream 829570 27833532 ~ 27834840 (-)
G172925 NA non-coding upstream 930019 27933981 ~ 27936828 (-)
G171734 NA other downstream 1415904 25578939 ~ 25582527 (-)
G171569 NA other downstream 1739069 25258839 ~ 25259362 (-)
G171256 NA other downstream 2072207 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2454352 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3818920 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 561296 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 667661 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 895520 27899482 ~ 27910890 (-)
G172919 NA other upstream 908275 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1794187 28798149 ~ 28860011 (-)

Expression


Co-expression Network