pnn (pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617)


Basic Information

Item Value
gene id pnn
gene name pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28680699 ~ 28686251 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926578.2
ACGCCCATCTTTTAGCGCCCCGCAGCCGAGTGTGCATGTTAGCAGAACAGCAGCTGATTAGCAACATGGCGGTGGCTGTGCGAGCTTTACAAGACCAGCTGGAAAAAGCGAAGGAGAGCTTGAAGAATGTGGAcgaaaatataaagaaattaacCGGCAGGGACCCGAATGAGTTACGGCCGGGTCAGACCCGACGGCTTTCCGTCACAGGCCCAGGTGGAGGTAGAGGCCGAGGAATCAACATCCTGCGGCGTGGACTCTCCGATGGCGGCGTCGGCGGAACCCCAGCCAAACAGAGGGACGTCGAAGGGGCACTCTTGAGGCTGGCGGGGGATCAGCGAGCCAGGAGAGATTCACGGCATGACAGCGACGCTGAGGACGAGGACGATGTCAAAAAACCAGCGTTGCAGTCATCGGTAGTCGCTACCTCCAAGGAGCGCACGCGTCGAGATCTGATTCAAGATCAGACCATGGACGAGAAAGGGAAACAAAGAAATCGCCGCATGTTTGGCCTGTTGATGGGAACGTTACAGAAATTTAAGCAGGAGTCGACCGTGTCCACAGAGaagCTGAAAAGACGGCAGGAGATTGAGCAGAAGCTGGAAGTGCAGGCGGAACAAGAGCGTAAGAAAGTGGAGAGCGAGAGACGCGAGCTGTTCGAGGAGAGACGAGCCAAGCAGACGGAGCTCAGGCTTCTGGAGCATAAAGTGGAGCTGGCTCAGCTGCAAGAGGAGTGGAATGCCCACAACGCTAAGATTATCAAGTTCATTCGGACGAAGACTAAGCCTCCGCTCCTCTACCTGCCGGGTCGCATGTGTTCAGCCACGCAGAAGCTCCTGGACGagtctcagaaaaaaatgaacgCCATGTTTGATGAAAGGCGCGAGGCATTCGCTGAGCACCTGAACAAGATGGAGGCTCGGCCGAGGCGTCAGTCTCAGCGCGCCGGAAAAAAGGAAACGGAGAACGCTGAAGGGCggaagaaagaagaggaagatgaagaggaggGTAAGCAGAAGGAAAGGTTGACAGGTAAACGACATGATAtagagatggaggaggaggatgaggaggaagcaGAGGAGGAAATggaagagagggaggagagtTCAGAGGtcagggagagggagggagtggGGGAGCAGGaacagaaggaggaggaagCGATGGAGAAGGAAGAGGGGAAGGGAGAgaaggatgaggaagaggaggaaaaggcAGCAGTGGAGGATAGAGAGGTAGAGGAGAAGATGGAGGTTGAGATGGTAGTGAGGGATTTAGAgggagagcagcagcagcaagaaGTGCAGGAAAAGAGTCCAGAGGTAGAAGAGGTAGGTAACGAcagggaggaagagaaagagaaggagcaAGAGAAGGAGAGCCGTCAGGAAGACGATGTCGAGTCCCCGAAAATCCCTGAAAACAACATGGAGGTCCAAGCCGAGGAATCTAAAGATCCTCCTGTTGAAGTTTCCTCACAACCCACAAGTAAAAAAGACAGCACAGAGCCGGGCGGCGCTCTCGAGCCCCAAACACACACCGAACAGCCAGAACAAGACTCAAAGCCGCCACAGGAAGCAGTCACGGAGCCTCGGGAAGCAAAGAACGCCGAGGAGGAAGCGGACGAGGCACGAGGTCGAGCTAAAACGAAGACGTCGCCGAGCAGAAGCcggaggagcagcagcagctcctctACGAGCTCCTCGTCCAGTTCCTCGTCCAGCGGCTCGAGCTcgtcctccagctcctccagcagctcctcgtCTGCCTCGTCTTCATCGTCGTCGAGCTCTCGGTCACGCAGCCGCAGCAGAGAGCGCCGCAGGAGGAATTCAGAGCGGAGGAAGAGCGACAGGAGTCAGAAGACGAGTAAAAGCAGCggtggacacagagagaggaaagagaggtCCAAGGAGAAGGACAGGAAGAGGACGGGTTCGGATGGAAACAGGTCGGGAAAGCGGTCCTCGCGCAGCGAGCGGGACCGGAAATCAGACCGTAAAGAGAAAAGGCGCTAAAGAAAAAGAACGGATCTCTGTTGCTTCTTTtgtattcaaaaataaaagcGAGTCTGAGAATCGTGTGTATGGTGAGGAGGTGAAATTGCCTTAAGATGACTTCctgttctttttaaattaagacTACatacctggtcttttttttttttttttttttattttttaaaatgacctcttaCATTCATCTCTCACTTCCTGTGCTTGCTGTCTTAATTTTTAGCTTTTATAAACATTGATTTTACGCTAATGCTAAAAACACGCTGATCTTTCAGCCCCGTTATCTGATACCTGACTCATAGAAAATGCAAGAATCAGCCATGATGAGTTTTTCTCGTACTGAACTTGAGCGTTTTTGACCTCGGTATTGTCGGTTGTCATGTCACGGTCGTATGGTAGAGTAGTGATCTTGTTTTGGGTACTTGTGCAGTGCAGATGTCTGttttcagtttctctctgtAAATGTCAGGCGTCCGCTGTGCCGAGTGAAGCGCAACATCCCTGATTTTTTGGAGAGAGCCGATGACCTTTTGTATAAATGACGCGTAATCATATGTTGGGAGGAAGttgaataaaatgcaaaaaaaaaaaaaaa

Function

symbol description
pnn Predicted to enable DNA binding activity. Acts upstream of or within neural crest cell differentiation. Predicted to be located in desmosome and nuclear speck. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human PNN (pinin, desmosome associated protein).

NR:

description
pinin-like

GO:

id name namespace
GO:0014033 neural crest cell differentiation biological_process

KEGG:

id description
K13114 PNN; pinin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926578.2 True 2613 mRNA 0.52 9 28680699 28686251

Neighbor

gene id symbol gene type direction distance location
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding downstream 157103 28481500 ~ 28523596 (-)
ccdc175 LOC108269708 coding downstream 441107 28225649 ~ 28239592 (-)
LOC113533755 gpr135,LOC107564991 coding downstream 465132 28211620 ~ 28215567 (-)
LOC113533857 LOC108269710 coding downstream 565234 28108094 ~ 28115465 (-)
LOC113533853 LOC108269710,LOC108269711,LOC108269709,LOC108269705 coding downstream 574495 28095797 ~ 28106204 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding upstream 924 28687175 ~ 28691402 (-)
LOC113534010 fbxo33 coding upstream 36408 28722659 ~ 28729487 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding upstream 50067 28736318 ~ 28742071 (-)
nfkbiab nfkbia coding upstream 82224 28768475 ~ 28772162 (-)
lrrc57 lrrc57,LOC107682003 coding upstream 181420 28867671 ~ 28877881 (-)
G173240 NA non-coding downstream 12479 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 123418 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 335932 28344439 ~ 28344767 (-)
G173025 NA non-coding downstream 456812 28181197 ~ 28223887 (-)
G173020 NA non-coding downstream 509821 28170274 ~ 28170878 (-)
G173255 NA non-coding upstream 29271 28715522 ~ 28716671 (-)
G173274 NA non-coding upstream 71527 28757778 ~ 28758906 (-)
G173282 NA non-coding upstream 175150 28861401 ~ 28862608 (-)
G173289 NA non-coding upstream 176657 28862908 ~ 28864167 (-)
G173268 NA non-coding upstream 179662 28865913 ~ 28866675 (-)
G172919 NA other downstream 768155 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 769809 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 954942 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1028398 27565258 ~ 27652301 (-)
G171734 NA other downstream 3098172 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 111898 28798149 ~ 28860011 (-)
G173287 NA other upstream 150641 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 214653 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 549668 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 559718 29245969 ~ 29329076 (-)

Expression


Co-expression Network