pomca (pomc)


Basic Information

Item Value
gene id pomca
gene name pomc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24233358 ~ 24235125 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926612.2
cacacgcacgtacaTAGTGGGACGTCGAGTGGAAGAACTTGGGTTCATTTACGCTGTTGCAGAGGAAGCATTCACAAACAGGAGAAGTACACCTTATTCCTTCATAACAGTAATGGTTAAAGAAGCGAGAATGGGGTGTCCTGTGTGGATGTTGGCTTTGGCTATGCTGTGTGCAAGTGGCTCCGAGGTTAGAGCCCAGTGCTGGGAGAACATTGGCTGCAGAGATCTGAGCTCTGACAGAAATATCCTGGAATGCATCAAGTTGTGCAGATCTGAGCTTACAGAAGAGTCTCCTATCTACCCTGGAGATGGTCACCTCCAGCCCCTCTTGCTCATGCCCAATGAAATCCCTGCTGCCACACTTTCCACCCCACAAGAGGATGAAGCTCCAGAGTCTGGTCCACAACATGAAGACAAGCGCTCCTACTCCATGGAACACTTCCGATGGGGTAAGCCTGTGGGTCGCAAACGCCGGCCCATTAAGGTGTACGCCAATGGGGTGGAGGAAGAGTCAGCCGAGGCCCTGCCGGCAGAGATGAGGCGCGAGTTAGGTGCTGTTGAGGACAGCACCGTCAGCCAGCAAGAGAAGAAAGATGGTTCCTATAAGATGAATCACTTTCGCTGGAGTGGCCCACCCACCAGCAAACGCTACGGAGGTTTCATGAAGTCTTGGGATGAGCGCAGCCAAAAGCCACTGCTCACACTTTTCAAGAACATCATCAACAAAGACGGACACCAGAAGAAGGACCACTGAAGAActgttaattaacattaacaattaaCATTCATTATGTAGAACGATATTTATTTGTTCTTATTTCCCCCCGATAAACTCATATTCTACTACTGTACACAGTAAAAGTTAGATTAAGATGAAACTTAAAAGACTTTGTTAACTAATAGTACTTTGTTCTTGTAGCCAGCAGTACATTCATCATATAATCTACAATAACTGCACACTAGAAGTAATATGTTGATTAAATATTGATTAGAGGCTGATGGTCAaaccacttttatttattaaaatgtactatactgtaaaatatgaaaatgttaactataaaaaaaattgtatttcaaGCAGTAAATGTCAAGGTGATTATTTTGAATGGAAACCCACTTATGCCATTAAAAATATAA

Function

symbol description
pomc Enables hormone activity and melanocortin receptor binding activity. Involved in several processes, including positive regulation of neutrophil mediated killing of fungus; regulation of appetite; and regulation of gene expression. Located in extracellular space and peroxisomal matrix. Implicated in familial Mediterranean fever; obesity; and osteoarthritis. Biomarker of severe acute respiratory syndrome.

NR:

description
pro-opiomelanocortin A1 precursor

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0032400 melanosome localization biological_process
GO:0005576 extracellular region cellular_component
GO:0005184 neuropeptide hormone activity molecular_function

KEGG:

id description
K05228 POMC; proopiomelanocortin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926612.2 True 1140 mRNA 0.43 3 24233358 24235125

Neighbor

gene id symbol gene type direction distance location
ctsba ctsb,LOC108433939,LOC107733172,LOC107592770,LOC107752788 coding upstream 235316 23988758 ~ 23998042 (+)
LOC113533835 dlk1 coding upstream 250723 23979390 ~ 23982635 (+)
trnay-aua NA coding upstream 268252 23965034 ~ 23965106 (+)
trnah-gug_11 NA coding upstream 268439 23964848 ~ 23964919 (+)
trnah-gug_10 NA coding upstream 271303 23961984 ~ 23962055 (+)
dnajc27 dnajc27,LOC107752776,LOC107733160 coding downstream 3532 24238657 ~ 24246890 (+)
xdh xdh,LOC107592779,LOC107733164,LOC107752765,LOC107594783 coding downstream 17736 24252861 ~ 24282623 (+)
zgc:162964 NA coding downstream 60481 24295606 ~ 24307018 (+)
LOC113534014 snap23.1,LOC108270295,LOC107697784,LOC107752778,LOC108433924 coding downstream 98400 24333525 ~ 24346184 (+)
rin3 LOC108270235 coding downstream 111977 24347102 ~ 24358534 (+)
G170904 NA non-coding upstream 197187 24035784 ~ 24036171 (+)
LOC117598313 NA non-coding upstream 199296 24028325 ~ 24034062 (+)
G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding upstream 222009 24010349 ~ 24011349 (+)
G170718 NA non-coding upstream 404172 23827063 ~ 23829186 (+)
G170716 NA non-coding upstream 451269 23779323 ~ 23782089 (+)
G171017 NA non-coding downstream 72729 24307854 ~ 24308329 (+)
G171019 NA non-coding downstream 74505 24309630 ~ 24309966 (+)
G171021 ect2l non-coding downstream 82409 24317534 ~ 24318066 (+)
G171135 smndc1 non-coding downstream 210478 24445603 ~ 24450067 (+)
G171121 NA non-coding downstream 250203 24485328 ~ 24491209 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 1210963 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2413299 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2466985 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2558897 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 3702136 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 228341 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 759368 24994493 ~ 25000619 (+)
G171329 NA other downstream 768858 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 941249 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 1023686 25258811 ~ 25318277 (+)

Expression


Co-expression Network