qkia (qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620)


Basic Information

Item Value
gene id qkia
gene name qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24783003 ~ 24861032 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926619.2
GCGCAGTCACGAGGAGAGACTGAGCGAGTGAGAGTCGCGCGCCTCTTTCCGATGAGatagtgcatatatatatatacacacacacacacacacacacagacgcagcGCGGCTCCGACACAGCGACGAACTGTTCACCAGCGCGCTCTGGTTTTATTTCGGAAGGGTTTTTGAGACCACAGCGAGCAGGACGGTGGGGGGAGCGAGGGATTTTGTCTGcaagtttttcttttgtgttcttttttctttgttttttctaaaGAAGGATTGTGGTTTTTGGGGGTTGTGGCCGCAGAGATGATGGTCGGGGAGATCGAAGTGAAGGAGAGACCGAGGCCGAGTCCTGACTATCTGATGCAGTTACTGAACGAAAAGAAGCTCATGACCAGTCTGCCGAACCTGTGCGGCATCTTCACACACCTCGAAAGACTGCTGGATGAAGagataaacagagtgcGGAAGGACATGTACAATGACACAGTGAGCGGTTTGGTAGACAAACACCCTCTGGAGCTTCCCGAGGCTCACGGTCCCATCGTCCATCTGCAGGAGAAACTGTTCGTCCCTGTTAAAGAATATCCTGACtataATTTCGTAGGCAGGATTCTGGGGCCACGAGGTCTCACAGCGAAGCAGCTGGAGGCGGAAACCGGCTGCAAGATCATGGTCAGAGGAAAGAGCTCCATGAGGGACAAAAAGAAGGAGGAGCAGAACCGAGGGAAGCCGAACTGGGAGCACCTGAACGAGGACCTGCACGTTCTCATCACGGTGGAGGACACACAGGCGCGAGCCGAGATCAAGATGAGGAGAGCCGTGGAGGAGGTGAAGAAGCTCCTGGTGCCGGCGGCGGAAGGAGAAGACAACCTTAAGAAGATGCAGCTGATGGAGTTGGCCATCCTTAACGGAACCTACAGAGACACCAATGTTAAAGCCCCGAACCTTGCGTTCTCTCTTGCAGCGGCGGCCGCAGCGGCTCAGGGCCCTCGGCTGATCGCCGCCCCCGCCGGTCAGGTACTTCCACCTGCCGCTCTGCCCCCCGACCCGGCCGGCACGCCCATCATGAACCTCATCCGTCCCGCGCAGATGCCCGCCATGCTGCCCAACGCCACCCCGACGCTGGTGCCCCCGGCGCCTGACGCAGGCATCATCTACGCCACGCCCTACGACTACCCGTACGCCCTGGCACCCACCTCTCTCCTGGAGTACCCCATCGAGCACGGAGGCGTCCTAGGTAAGCGGGCGTGGGGGCTCGGTGCTTCAGGCTTTGGCGGGCATCAGGACGGCACCGCCGCAACGTTTTACGGGGGCAGCTTGGACATGACGATGCCAAGCCCTGCCCAGGACTTAGTCCAAGGTGCAATGGCTACTAAAGTGCGGAGACATGACTCACGGGTCCATCCTTACCAAAGGATAGTGACCGCAGACAGAGCCGCCACCGGCAACTAACaaatgacctctgacctctgaacTCTTCACCCAATGATGAGCCGCCCCAAGCCTGCCTGCTGATCAGATTAACTGGTAATTGCCTTTTGCTAGCCTGTTGGACGCTGAGAAAACGAGAGAGGCACCTGTGACCCTAACACACAAACCAACACAAACCGCAACAAGATCAAATGCCTACAAACCGACAAGTTGTGTGATGATTTTAATGTTAGGCGTTTATGTTTATTGACTGTAacgaccctttttttttttttttttttttcttttctcccctgcttgtttctttctttttttctttctcaatcCCTGATAGTTGGGTGATGTTCTTGGTAGCAAAAATCTGCACTGAGttaataagcaataaaaaaaaaaatcatgtattaTTTTCTCCCTTACCTTCACATCCCCACTAGACGTTCTTATTTCAATAATTACAATTCGGAACGATCAGGATGCAGACTGAAATTCATGGAAACCTGCACATATCTAAATTTTAGTgagtgaaaaggaagaaggaaagaaaccCACTCACACAAACCTGTTGTGTGTCATTGTCGTGTgtagcaatgttttttttttattattattattattttctttctttcatctatTACGTTTTCACAATGCTGACACATTCTGGGTGCGCCTATCTAGCTGACGCTGAGTGCATGGCAAAATGATGGACTGCTTGGGGGGGGGAAAgagctttttcttttattttgttttattctttatgtgCTTTGTATTATTTTGATAGTAGGACGAAGCTTAATCATACCTGCAGTATGGGTGCCATCTCAGCCGTGTGGCAGAACGGGGTTAAGAAGAGTATTCCAGAGTATTCTCAGTAATCTTAAAGCTAGGATGTTTATGGCTGCGGAGATTTGGGCAGGAAGAGTTTGTTACACTCACCTACGCCACCCCAAACACCCCCAGCCTCGAAAATACAGTGCCTGAAGTTTAtatatagagttttttttttttttctttttttttttttttttttttttgaatgagctgtgagacaaaagacaaaaaaaaaaaagtattatgtgtGCGTATTTAGCCAAAGGGTTACAATTTGATAAATTTATCTCTATACAATTATGTATCTAAGCGCAGATGGTTCGTTCTTTTAGTCTAGAGTATGAAAAGGTGTGTGATGTGCCTGTGTACGTTTGACATCCAGTCAAATAGCATGAAAAGACAATAATCCCTCAGCCACTGTGCTTCAGTCTCCTTTaagttgaataaaatcaagaaaCACTACTAAATCTTGGATGAATTAGACAGGAAGCGAGGAAAAGAGTTCTGTACATACCtgcgttttatatatatatatattactttattttccCTTCGTgattaacatttttcatttctaattCTTAACCCTTTAACTAAAATTGGgcgtcattattattattattttttccattccTGCTTAATGGGATGAATCTTTTCCGTATTTTTTGATTGttgaaaaagagaagaagaaaaaaaaagctcatccACAATGTGtcccacaatttttttttttttttttttttttaaaaacatcagtCCGTAGTTCATCTACAGAACCCATCGAGTTGAACTCtttctcaagaaaaaaaaaataggatgtgAAAGCCATGTCTGCCTGTTCAAATTGCTTTATACATACatgatctatatatatatatatatatatataaaaaaaaaaatgtatacaaatgtAGATAATGTCATTGCATATTAAGATGCTGAAACGATCAAAATTAGATACTTTTACAGGGTGCTGgagaagaaatatatttttggcaATTTTAGCTTTTTATACTTAACTTGCAgttacaaaatgtacaaaaaatgaagaaaaaaaaagaggaaggaagTTTGCGTAAAAGATTTTGCTATTGGCGA

Function

symbol description
qkia Predicted to enable mRNA binding activity. Acts upstream of or within several processes, including 3'-UTR-mediated mRNA stabilization; regulation of smoothened signaling pathway; and skeletal myofibril assembly. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including heart tube; mesoderm; musculature system; nervous system; and solid lens vesicle. Orthologous to human QKI (QKI, KH domain containing RNA binding).

NR:

description
PREDICTED: protein quaking-A isoform X3

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0051028 mRNA transport biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0070935 3'-UTR-mediated mRNA stabilization biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14945 QKI; protein quaking

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926619.2 True 3349 mRNA 0.44 9 24783003 24861032

Neighbor

gene id symbol gene type direction distance location
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding upstream 15587 24629095 ~ 24767416 (+)
ptafr ptafr coding upstream 221725 24554583 ~ 24561278 (+)
trnar-acg_3 NA coding upstream 353341 24429590 ~ 24429662 (+)
trnah-gug_13 NA coding upstream 353528 24429404 ~ 24429475 (+)
trnae-uuc_2 NA coding upstream 354752 24428180 ~ 24428251 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding downstream 186638 25047670 ~ 25055250 (+)
ptger2a LOC108269911 coding downstream 253745 25114777 ~ 25132890 (+)
LOC117598271 LOC108191637 coding downstream 310513 25171545 ~ 25173314 (+)
gpr137c gpr137c coding downstream 345804 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 520680 25381712 ~ 25388660 (+)
G171121 NA non-coding upstream 291794 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 332936 24445603 ~ 24450067 (+)
G171021 ect2l non-coding upstream 464937 24317534 ~ 24318066 (+)
G171019 NA non-coding upstream 473037 24309630 ~ 24309966 (+)
G171017 NA non-coding upstream 474674 24307854 ~ 24308329 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding downstream 211714 25072746 ~ 25076475 (+)
G171413 NA non-coding downstream 273568 25134600 ~ 25134885 (+)
G171430 LOC108191637 non-coding downstream 314794 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 328133 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 410817 25271849 ~ 25279677 (+)
kdm1a kdm1a other upstream 300149 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 1760608 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2962944 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 3016630 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 3108542 21669907 ~ 21674461 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 133461 24994493 ~ 25000619 (+)
G171329 NA other downstream 142951 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 315342 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 397779 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 565859 25426891 ~ 25430929 (+)

Expression


Co-expression Network