slirp (slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374)


Basic Information

Item Value
gene id slirp
gene name slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27004109 ~ 27006749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926627.2
ATCTGGGTCATAggtagacctttttttttttttccaaggacGAAACATGGCGGCATCCAGCAAGAAGGTGTTTGAGCTTTTTGTCTCAAAAGTCCCTTGGACTGTCGCAACAAAGGAGATAAAAGAGTATTTCGGGCAGTTCGGCCAAGTGAAGAAATGCCTCCTGGTTTTTGACAAAGAGACAGGCTTTCATAGGGGCTTTTGCTGGATCGGCTATTCGTCAGAGGAAGGACTGCAGAACGCACTTCAGAAAGATCCTCACATTATGGAGGGAAACAGGCTCCAAGTACAAAAGAACAGACGGCCATTTATGggcaaaaaagcaaataaagaagCTGATGAAAGCTGAACAGGAACATTGACTCTGTAATGTGAagattatgtaatttttttttttttgtttgttattacaAATCTGTAACTTATGTCTATGAAATTAACATTGTCTTTGTGGAAAGGTGACTTTgcaactttaaaataaatgtgctatTGACATGTGTACTGGTTTTTGCTTCAGTGAAAGAAGTTTGATGTCGAAGACCGAGcaggcaactttttttttttttttttttttttttgaagacacACTCGTGTTCAGCATACTTTCTTAGACAGGACTATAGAATAAGGAAAATAAGATATTACATGGCTGTATAttgaaacaaaaatgataaatgctgTCATAGCATAAATAATACTAGGAAGACTgaattcatttgtatttaatttgtgtACCTGAACACTTGTAACATGAAATCAGCTGGTACTTCAAGCTCTATCTAGGGTTCTGCTTCATCCCTAATGTCTGGAATCAATAACAAAACCTGGttttatagtgtatatgtacatattagttacatttacagcacagcactgctgaattctcaaatctgtttgttcgtctaatacattatcatttttacaACACTATTTCATTACACTTGGACTTGTATGTTGGACACGCCAcgtaaacacattaaacaacGTGTGTAATCAA

Function

symbol description
slirp Predicted to enable RNA binding activity. Predicted to be involved in mitochondrion morphogenesis and negative regulation of mitochondrial RNA catabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and segmental plate. Orthologous to human SLIRP (SRA stem-loop interacting RNA binding protein).

NR:

description
SRA stem-loop-interacting RNA-binding protein, mitochondrial-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25095 SLIRP; SRA stem-loop-interacting RNA-binding protein, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926627.2 True 997 mRNA 0.36 4 27004109 27006749

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_12 NA coding upstream 88679 26915358 ~ 26915430 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding upstream 89880 26903639 ~ 26914229 (+)
vrk1 vrk1 coding upstream 584902 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 644018 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 655769 26334822 ~ 26348340 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 1185 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 720129 27726878 ~ 27760866 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding downstream 761519 27768268 ~ 27773076 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding downstream 774719 27781468 ~ 27793212 (+)
pnoca LOC108270041 coding downstream 861491 27868240 ~ 27881903 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding upstream 30167 26973696 ~ 26973942 (+)
G172114 NA non-coding upstream 35693 26967610 ~ 26968416 (+)
G172118 NA non-coding upstream 36573 26967332 ~ 26967536 (+)
G172099 NA non-coding upstream 43871 26867117 ~ 26960238 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding upstream 164631 26803056 ~ 26839478 (+)
G172352 NA non-coding downstream 326655 27333404 ~ 27333880 (+)
LOC113533960 NA non-coding downstream 488153 27494902 ~ 27531363 (+)
G172405 foxn3 non-coding downstream 558557 27565306 ~ 27568639 (+)
G172414 NA non-coding downstream 574969 27581718 ~ 27673480 (+)
G172422 foxn3,LOC107680774,LOC107751738,LOC107755777 non-coding downstream 615724 27622473 ~ 27652164 (+)
LOC113534148 NA other upstream 1573180 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1685832 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1826212 25176374 ~ 25177897 (+)
G171329 NA other upstream 1996343 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 2003490 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 149594 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 718458 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1021251 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1854713 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2047484 29054233 ~ 29138878 (+)

Expression


Co-expression Network