nfkbiab (nfkbia)


Basic Information

Item Value
gene id nfkbiab
gene name nfkbia
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28768475 ~ 28772162 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926643.2
ATTCTCTGCAGGCTGGTGTTGGAAATCCCCCACCCGCACCGGAGCTCCTCCTCTGCGCACGAGGAGATTAAACACTCCTCCACCCGAGCGGATCGGCTCAGATCAGctcacacttcacttcacacatacacacacacatacacacacactctctctcacacacactctattaaCACGGCTCTTTATCGGAACATCACCAGCACGAGCCCGATGGATTACGGTTCGGAAGGGCGCGCGCACAAAGCGGGGACGGTGATAGACGAGCGCCTGGACAGCGGGCTGGACTCCCTGCGCGAGGACGACACGGAGGATTACTGCAGCGCGCGCGAGGGGCCCGTGACCGCCGAGTTCGCGAGGCTGAGTGTAGACGGAGCGCACGAGGAGCGCTGGAGGACCGAGATCACGGAAGACGGAGACACgTATTTGCATCTGGCTATCATTCATGAGGCCCAAGACATGGCACTGAAAATGATCGAAATGTCCGTCAGGCACCCGTTCCTGAACAAACAGAACTACCAGAGACAGACGGCGCTGCACTTGGCTGTGATCACAGAGCAGCCTCTGGTGGTGGAGCGTCTGCTGAAAGCCGGCTGCGACCCCATGCTGGTGGACAACAACGGCAACACGGCTCTGCACATCGCCTGCAGGACGGGATCGCTCACGTGTTTCGGTCTCCTCACGCAAAGCGGCTTGGAGTATCTGCCGTCCATCCTGCAGATGCCCAACTACAGCGgTCAGAAATGCTTACACGTGGTGGCTGTACACGGTTTCCTCTCACTGGTGGAAAGCCTCATCTCATTTGGAGCAGATATCAACGAACAgGAGCAGTGTAACGGCAGGACGGCTCTCCACTTAGCCGTGGACCTGCAGAACCTCGAGCTGGTGAAGCTCCTGATCAGCAAAGGCGCTGACGTGAACAGCTTGACGTATGGCGGCCACTCGGCGTATCATCTCACGCACGGACGCCAGAACATCGACATCCAGAAAGCGCTGCACGACGTCACGGATCAGGACCTGCGGGATCTGCCTGAGAGCGAGAGCGAGGACAGCGAAGATGAATACATCTACGACTACGACGACAACGAGCTGCAGTCCGacgatgagTACGATGACATTAAAGTGATGGGGCAGGAGTAGAGAAGTGGTTCAGTGGTTCGGAGAGTTGAAGATGATTAAAAAACTTCCGGTCCTGCGAGAGGAGATGCCGGATAAAAGGCTACAGGAGGACATACCGAGATAATCGTGACCCTGAGCTGGAGACACGCAGGCGCAAGACCATGGACGCCAAGAGGAAATGTTCAAGAAGAAAAGATCCGAATCGTAAATAAACGggaaaacagaagaagagagaagacgGCAGATGTGCTGCTTAGGCGTGGCCGATCCTGGGTTTTAGTATCGTAATTATCTAACAATGTATCATGGTTTACGATAGTATCGTGTGGACACATGTCCCTTCCAATGTAAATACGTCCAAAATGAGGACACTTGGAAGACAACTGGGACGATGCGGTGCGTTAAATATCGCGGTGTATCGCATAACTGATAATCGGCGCATGCCTGGTGTCTGGACTGAAGCTCCGCCCCTGCAGTGCTGTTgtattaaactgtaatatattgtgtatagacagatttatttttatatgtgtaaatgtgtaaagatATGGTGTAGCCTGTTTTATTCTGTTGGAAATTCCAAAATTTTCTGCTAAATTAAAACCCCGTAATTGCGCA

Function

symbol description
nfkbia Enables several functions, including NF-kappaB binding activity; nuclear localization sequence binding activity; and ubiquitin protein ligase binding activity. Involved in several processes, including negative regulation of macrophage derived foam cell differentiation; positive regulation of cholesterol efflux; and regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of NF-kappaB transcription factor activity. Located in cytosol; nucleus; and plasma membrane. Implicated in several diseases, including childhood-onset asthma; hematologic cancer (multiple); hepatitis B; hepatitis C; and lung disease (multiple). Biomarker of nephrotic syndrome; prostate adenocarcinoma; prostate cancer; and pulmonary tuberculosis.

NR:

description
NF-kappa-B inhibitor alpha-like

GO: NA

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926643.2 True 1734 mRNA 0.53 6 28768475 28772162

Neighbor

gene id symbol gene type direction distance location
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 26404 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 38988 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 77073 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 82224 28680699 ~ 28686251 (-)
lrfn5a lrfn5,LOC108269707,LOC108443922,LOC107572671 coding downstream 244879 28481500 ~ 28523596 (-)
lrrc57 lrrc57,LOC107682003 coding upstream 95509 28867671 ~ 28877881 (-)
il17a/f2 LOC108269798 coding upstream 110090 28882252 ~ 28885109 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 144214 28916376 ~ 28928895 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 215197 28987359 ~ 28996157 (-)
mrpl57 mrpl57 coding upstream 300542 29072704 ~ 29075467 (-)
G173274 NA non-coding downstream 9569 28757778 ~ 28758906 (-)
G173255 NA non-coding downstream 51804 28715522 ~ 28716671 (-)
G173240 NA non-coding downstream 100255 28667813 ~ 28668220 (-)
G173110 NA non-coding downstream 211194 28557079 ~ 28557281 (-)
G173067 NA non-coding downstream 423708 28344439 ~ 28344767 (-)
G173282 NA non-coding upstream 89239 28861401 ~ 28862608 (-)
G173289 NA non-coding upstream 90746 28862908 ~ 28864167 (-)
G173268 NA non-coding upstream 93751 28865913 ~ 28866675 (-)
G173292 NA non-coding upstream 99308 28871470 ~ 28871955 (-)
G173293 NA non-coding upstream 101281 28873443 ~ 28874318 (-)
G172919 NA other downstream 855931 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 857585 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1042718 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1116174 27565258 ~ 27652301 (-)
G171734 NA other downstream 3185948 25578939 ~ 25582527 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 25987 28798149 ~ 28860011 (-)
G173287 NA other upstream 64730 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 128742 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 463757 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 473807 29245969 ~ 29329076 (-)

Expression


Co-expression Network