map7a (LOC108270039)


Basic Information

Item Value
gene id map7a
gene name LOC108270039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27914404 ~ 27927660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926664.2
tttattcagctCCGAATACATCTCATCCCTGCTGACGTGAACGATGCTGACTCTTAAAGGGGAAGAGAAAGAGTGCAAATCAAAATAGATTCATTTACAGCACGCTTTGTGTTGAGTGGGATTGGGACGCAGCCCGAGCTGGAGAGAatcagctgctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacactcagatccAGAAGCAGATACAGCACAGAGGAGAATCAGGGTGTAACAGCACAATGCCAGCTCCATGTATGAGCCTGGCAGGGCAGCAGAGAAACTGGAGGCAGGCTGGCAAGGCAACGTTCTCGAGGCTCTCCATCCTTCCAGAAGAAGACAAGATGACAGGAGCCGACCTCCATGTGAAGTCCAATCCGGAGCAGAAGCGAGCGTCCTTTTCTCCCTCAGCACACATCAGTAACCACAGAAGAAACGGAAACGCTGCTGCTGCAGAGTCTCACACGCTGAAGGTAGACGAGAGACTGCGACTGGCTCGAGAACGGAGAGAGGAACACCTCAAACAGATCGCTTCTCGGGAGCGTGGCTGGCTGGCCCGAGAGGAGAGAGCCCGGAGGTTCTACGAGAGACACCTGGAGGAGCGTCGGAAAAAGCTGGAGGAGCAGAggcagagggaggagaggaggaggaatgcTGTGGAGGAAAAACGCAGACAGAGGCTCAAAGAAGAGCGAGAGCGGTACGAGTCTGTGGTGCAGAAGACCATGGAGAGGAGCCAGAAAGCCAAACAGAGAAGTACACAGAGGAGAGTGTGCAATACTAAGAACAACACAAACGCTAAACGCCGCGCTCTTAGTCAGTGGGAGATAAACCTGGTTAATCGCCTTCAGACTCCTACCATCTCTTATCTAGCCAGGAGCAGGAGCGCTGTATGTCTGTCCAGAGGAGAAGTTGTTCATATTTGTCGACGTGCAGTTTCATGCCACACTATGAGCAATAGCAGTCCTCAGAAACCTGGAGGAACATCGACACACGGCAAGGCCATCAAGCCCGGGGTGATGAATGACAGCCACCAAACCTCCGGAAATAAACCGGGTTCAAATCTCGAGAGGCGAGAACGGAAAAAGCCCAATTCTCACACAGCGAGTGTTAAAGTCAGCTCCACATCAGGGACAGAGGACAAAACAATAGCCTCATTAACAGGATTGAGGCTGACTCTGAGAGTGTCCCCCAGTCAGGAGTGTTTGCCCCCCCTGCGTGAGGAGGAAGATCCGGACCCAGAGAGAGCGCTGAACTCCCATCAGCCTCAGCGTGACCAGTCAGCTGCTGTGCGCTCACATGAGGACGCTGGGTGTGATGGACCGGTCCAGGAGAACCCGGGTTCTAACAGACGTCTGGCTGCTCCTGCATGTCCTCACGCTCCTAATGaGCGAAGTGTCGGAGCCCAGAGCAGACCCTCAGCAGGAACCACAGACCCTGAAGAGGCTTCACGTCTGCTGGCGGAGAAGAGACGACAAGCTcgactgcagagagagagagaggaagaagaacacCGGCAGAGGGAGGAAACAGAGCggcgaGGGAGAGAAGAATTGGCCCATCGGAGAGCTGAGGAGCGAGCAAGGCGTGAGGCAGAGGCCCAGTGTGAGGAGAAAAGgatgagggaggaggaggaacgACGGAAGGCAGAAGAGGAGAAGgctcagaggcagagagaggaggagaggagactTCAGCAACAGaaagaagaagaggaggagaggcaGAGGCTTGAGAGAGAGTCACGATTCCAGAGAGAGGAAAGCGAGAGGCAGGAGAGGAAGAAGACACCTGCGTTGTCGTCCACACCGCTAAATGAGAATGTGAAGCCCCTCCACAGCCTCCCCTTAGAGGAGGTGATCAAGCTTCCCAGCCCAGCCAAGGGCTCGATGATGAGCTTAGCCAACGAGGAGGACATTCTTCCCACAGTGGCCTTCAAGGAGCGCAGGTCCATCCGCACCCTCACGGGTCTGGAGGAGATCCAGGCCCATCAGAGAGCAGAAGTCATCTAA

Function

NR:

description
PREDICTED: ensconsin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926664.2 True 2040 mRNA 0.55 14 27914404 27927660

Neighbor

gene id symbol gene type direction distance location
pnoca LOC108270041 coding upstream 32501 27868240 ~ 27881903 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding upstream 121192 27781468 ~ 27793212 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding upstream 141328 27768268 ~ 27773076 (+)
tdp1 tdp1,LOC102776284 coding upstream 153538 27726878 ~ 27760866 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding upstream 788499 27007934 ~ 27125905 (+)
scaf8 scaf8,LOC107749595,LOC107675315,LOC107572866,LOC107728963 coding downstream 3514 27931174 ~ 27963120 (+)
tiam2a tiam2 coding downstream 34760 27962420 ~ 28056561 (+)
ptp4a2a ptp4a2a,LOC108269715,LOC107680006,LOC107564961,LOC108413228,LOC107583452 coding downstream 195343 28123003 ~ 28127853 (+)
ppp1r13ba LOC108269703 coding downstream 201059 28128719 ~ 28165654 (+)
sdsl sdsl,LOC108413229 coding downstream 238493 28166153 ~ 28170563 (+)
G172741 NA non-coding upstream 72221 27840986 ~ 27842183 (+)
G172719 NA non-coding upstream 115224 27794382 ~ 27799180 (+)
G172414 NA non-coding upstream 240924 27581718 ~ 27673480 (+)
G172858 NA non-coding downstream 173847 28101507 ~ 28108665 (+)
G172830 NA non-coding downstream 191402 28119062 ~ 28122832 (+)
G172873 NA non-coding downstream 220917 28148577 ~ 28191912 (+)
LOC113534053 NA non-coding downstream 309013 28236673 ~ 28244726 (+)
LOC117598375 NA non-coding downstream 461536 28389196 ~ 28435398 (+)
trnak-uuu_7 NA other upstream 189125 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 446838 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 2483475 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 2596127 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 2736507 25176374 ~ 25177897 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 100340 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 933802 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 1126573 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 1142060 29069720 ~ 29073089 (+)
nrde2 NA other downstream 1165804 29093464 ~ 29138776 (+)

Expression


Co-expression Network