LOC113534080


Basic Information

Item Value
gene id LOC113534080
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26307077 ~ 26312507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926677.2
ATGTCTTTGGAAGAGATTCATGAGACAGAGAAGTCTGTGGAATGGAGCGTTCCTGTGAAGCCCTTGCTGAGCAGGAACGTCGTGGCAGAAAGTCCACTGGAGATCAAGCAGGTGTATAAACTGCTGCAGTGCGTAAACCAGAAAAATAAAGAGCGGGTGGAGAAGATGGTGCGTTTGGGCGTCCCAGGTCTGATCAACCTGACAGAGCCGAAAGAGGGGACCAGCGCTCTGCACCTGGTCTCCGTGGCCAACGATCTGGACATGGCTCGTCTCCTCCTGTCTCTGAAAGCTCATCCTGATATCCAGGACAAAAGGGGACGGACTGCAATGATGCTCGCTGCAGAACTCGGTCAAGTCCGCATGGTAGAGCTTCTGGCCAATAATAAAGCCAGCATGACTTTAGTGGACAAAGAGGGCAAGGGGCTGCTGTTTTACTGCATTGGCCCGACGAAAATGCACGCACAAATCCTGGAGATGGCAGTTAACATGGACGCAGATGTTAAGAACGTCTCCTACGCAGGGAAATCTGTGTTCATGTTCGCCTGTGAAAAAGCAAAAGAGTGTGAGAACCTCTGCGTGCGGCTTTTAGAGAGAGGAGCCGATCCCAACGCCGCTGATCCGgtGACGGGGTGCACGGCTCTGATGGCGGCGGTGAGAGCCGGATCTGTTGCGTTGGTCAGAGCGATCCTGAACACAGGAGGAAACCCGAACACAGTGGACAGAATGCGACTGCACGCTGCTCACATTGCAGCGGCCAAAGGCTTCTTCGAGGTGCTGAGGATGCTGTCAGGATACTCGGCTGATTTCAACCTGACGTCATTGCTTGGAAATACAGCAATGCATGCAGCTGCAGCTGGAGGCCACGCTGAGTGCTGCAGGTTTCTGTTTCAGAGAGGATGCAGTGTGATGAAGAAGAACCAGCAGGAATTACTTCCAAGTCAGATTGCTAAAAAAAACGGCCACAAAGCTGCTCTAAAGGAGCTAAAAGAGGCAGAACAAGCTATGAACTCTGGAAAACTACCTTCCGTCACTGAAGCCAGGCTACACGATTGGTCATATGAGCATGAGGCAGAGCTGAGGCAGGCCTTCCAACCTGCTGAGGAGGCAGACGCTCCTGTGGACTCTGTGTCAAAGGAGACGTTTGTGTCCGTCCTGCAGGCGCATCACGCTCCTATAGATGACGACAGTCTGAAAACTGTCATCAGCTTGCTGGATAGGAATTGCTGGGGCAAAGTTAACATCAATGACTTCTTCATGGGGAGTAAGTTCCTGCCGAACAAATATGAGCTTTCTTCCTATAAGCCTACGACGTTGACGACAGGCAGGACGGATAAGATGGAGGCAAAGACAGACGGGTGCCCTCAGACGGGTGACGTCGTTCCagatatgatgaaaaaaattgacGGCATCCTGCAGTACTTGAGTAAACGCTTTGAGCCGCTTACTGATACCAGTCGGCAGGCGGCTGACCGTACAGAAGACCCTTCTTTGTACTTTGATGAGCCCAAGGAAATTTACATCAACGCCAGCCTATGTGTGAGAAGAAACGACTTTGAGTCACTGAGCTTAGCGTTTAGCCAGCATGTCCCTGTGGACATTAGGGATCATTTTTACAAAACGCCACTCATGACTGCCTGCATCATTGGGAACTACCAGATGGCTCGCTTCCTCATCTCACATGGGGCGAATGTGAACATGTATGATCAGTTTCAATGGACTGCTCTACATCACGCCTGCTTCGCCGGACACGCGGATATCGTCAAACTCTTACTGGAGCACAGTGCTGTTGTAGATGCTACGACCTCAAACGGAGTGACGCCGCTAATGAGGGCCATCCAAAGCTGCAAATTCAACTGCGTGGATCAGCTCGTGAATTCCGGCGCGAGCATTGAGGCCATAAACAAACACGGACAAAACTGTTTGGTCCTCGCCCAGATGTATGGAACTAGGGAAATCTGCGATTTTGTCGAAATTGAGTTAGAGCGTACAAAGCTCAGCCAGGCAAAGGGatcaggaaaagaaaagattCTGACACCAGCACCTCCTGCAGCTAAGgaggGTGTGACAGAAAAGACAAAGAAGAGCGCAGGCCAAAGAAGACGCATAATAGCTTTAAATCCACACACTACAGACCACTGCATTACCCTCCCCTCTACAACCttttggGGGAAGGAGGTTGTATCGACCCCTCAGCTTGAGCAGAGGCAAGCAGACAGGAAAAACCATTTCACAAATGAGGACAAGATGAAGATCTCAGAAGACAAACCCATTAGTGCAAACACAGCGAGGAATCCGAGGCAGAAGGGCGCGACCAGCAATCGTTAAAGCAAAAAAGCACAAAGCTCTTCGGACAAAAACAATTAATCGCATCCAATTGTACCAAAAGTCTTATTGTACAATGTCAAGGATGCACACTTGCCTGCATTGTGGACGAAGCTGCGTTCCTCCTTCAGAAACGTGCTCACAAGGTTGTCAAACTATATGCTATGCCATTGTTTGCATAAGTCATATACCAAAGTGGATGGAGAAAACCATGATTAAataagctaaataatttacaggcAAACTGATATTGTACAATAAGACTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926677.2 True 2590 mRNA 0.49 9 26307077 26312507

Neighbor

gene id symbol gene type direction distance location
si:dkey-87k14.1 flrt2,LOC107583684,LOC107750877 coding upstream 88909 26213268 ~ 26218168 (+)
gsc gsc,LOC102791948,LOC101076325,LOC107578966 coding upstream 396771 25904043 ~ 25910306 (+)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 coding upstream 448654 25829865 ~ 25858423 (+)
clmn clmn,LOC107583621 coding upstream 479042 25794575 ~ 25828035 (+)
syne3 syne3 coding upstream 534211 25741075 ~ 25772866 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding downstream 10892 26323399 ~ 26334056 (+)
LOC113533735 amhr2 coding downstream 22315 26334822 ~ 26348340 (+)
ak7b LOC108269780 coding downstream 37355 26349862 ~ 26360091 (+)
vrk1 vrk1 coding downstream 92883 26405390 ~ 26419207 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 591132 26903639 ~ 26914229 (+)
G171684 NA non-coding upstream 528345 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 714328 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 784388 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 917572 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 917911 25388772 ~ 25389166 (+)
LOC117598331 NA non-coding downstream 313433 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 477016 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 490549 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 554610 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 654825 26967332 ~ 26967536 (+)
LOC113534148 NA other upstream 876148 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 988800 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1129180 25176374 ~ 25177897 (+)
G171329 NA other upstream 1299311 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1306458 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 843836 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 1412700 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1715493 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2548955 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2741726 29054233 ~ 29138878 (+)

Expression


Co-expression Network