cx52.7 (LOC108269563)


Basic Information

Item Value
gene id cx52.7
gene name LOC108269563
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25679314 ~ 25680741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926682.2
ATGGGAGACTGGAACTTGTTGGGAAGCATCTTGGAGGAGGTTCACGTTCACTCCACCATCGTGGGCAAAATCTGGCTTACCATCCTGTTCATCTTCCGCATGCTCGTGCTCGGTGTAGCAGCAGAGGACGTTTGGGTGGATGAACAAAGTGAGTTTATATGCAACACAGAGCAGCCAGGCTGCAAGAACGTCTGCTATGACCAGGCATTCCCAATCTCGCTCATCCGCTTCTGGGTACTGCAGATCATCTTTGTCTCATCTCCTTCACTGGTGTACATGGGTCATGCTTTGTACCGTCTCAGAGCTCTGGATAAGGAGAGGCACAAGAAGAAAATTCAACTTCGAGCTGAGCTAGAAGAGACTGAGTTCTTGCTGGAGGAGCACAAGCGTCTGGAGCGAGAACTTCGCAAGCTAgaagaacataaaaaaatcaaaaaggcTCCTCTGAGAGGCTCTTTACTACGCACATACATCATCCATATCCTTACCAGATCTGTACTGGAGGTGTGCTTCATTGTGGGCCAGTATATCTTATATGGAATAGGGCTGGATCCTTTGTTCAAGTGCGACAGGGTACCTTGCCCCAACACTGTGGACTGTTATGTGTCCAGACCAACAGAGAAgaccatcttcatggtttttatgATAGTCATTGCTGGGGTTTCTCTGTTCCTGAACCTCATGGAGATATCTCATTTGGGgacaaagaaaatcaaacagACTTTATCTGGCTTGCAATTCACAGAGGACAACAGCCTTTGCAAAGCAAAGCAAGCAGCAATGGCGGATTTATCACTGAGGAAAACAGCAAAAATTAGCATTCAATCTGGCCCAATGGACTCTCTGTATTTACCCAGTATGGGTTCAAATACCCTGATAGCTGAGCAGAGACATAGCATCTTTGCAGGTACGACTCTTCCTGTGTCTTGCCTAATCCAGACACGTCAGGACAGCCAAGGATTTATCCATAATGGACGTCTTCAAAGTCTTACAGAGCAACATAATGCTGAGGATCATCAAAATGATGACTTGCCTCCAGAAAGCAGCACTGGTTCATGTAGAGACAGCAGACTTTCAAACTCAGGCCAACAAAGTCATGAAGGTCAGCACATTCAAAGGCCAAGCCATAGTGAGATACCAGGCTGCATTCGTAACACTATGCACCGATCGAGCCATGTCCCTGAGCCAACTGAGGATGGCACAGACTCCTCAGACAGTGACTTCTACCCTAACCCCAGGAAAGCCAGCTTCATGGCACGGATGTCTTCAGACAGCGTCTCGGCCAGCCCATCCTGCCCTGGCACCAGGAGCTCCGAGTCTGAGCTCGGTTCACTTAATGACCTACCCATGAACCCACCACCGGGAGGACGGAGGATGTCAATGGCAAGTAGAGCCAAAAGACACACGGCCACTGACCTGCTGGTTTAG

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926682.2 True 1428 mRNA 0.48 1 25679314 25680741

Neighbor

gene id symbol gene type direction distance location
manea LOC108270006 coding downstream 9339 25664338 ~ 25669975 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding downstream 18659 25651808 ~ 25660655 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding downstream 39093 25634727 ~ 25640221 (-)
si:ch211-266g18.9 LOC108270005 coding downstream 45431 25620016 ~ 25633883 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding downstream 86571 25587488 ~ 25592743 (-)
LOC113534079 LOC108269777 coding upstream 632068 26312809 ~ 26321625 (-)
si:dkey-288a3.2 LOC108270389 coding upstream 682325 26363066 ~ 26403989 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding upstream 1060633 26741374 ~ 26794919 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding upstream 1138159 26818900 ~ 26845135 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 1166105 26846846 ~ 26898308 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 169694 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 209240 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 289443 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 387376 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 389812 25287152 ~ 25289502 (-)
G171755 NA non-coding upstream 92763 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 297055 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 377504 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 914540 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1091391 26772132 ~ 26773050 (-)
G171734 NA other downstream 96787 25578939 ~ 25582527 (-)
G171569 NA other downstream 419952 25258839 ~ 25259362 (-)
G171256 NA other downstream 753090 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1135235 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2499803 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1884517 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 1990882 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2218741 27899482 ~ 27910890 (-)
G172919 NA other upstream 2231496 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 3117408 28798149 ~ 28860011 (-)

Expression


Co-expression Network