ism2a (ism2,LOC108413947,LOC107583490)


Basic Information

Item Value
gene id ism2a
gene name ism2,LOC108413947,LOC107583490
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26929661 ~ 26955838 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926758.2
acacacacacacacacacatacacgcacgcacgcTTGAGTTCAGATCAGCAGCGTTTACGCATGGAGCAGCAGGACACCAGGAGGAACTCACAAATGGCATCTTAAGTTCAAGGAGTCGTTCCTGAGGATCATAAAGGGCTGAGATGTTTCCGGAGCTCCTTCACAAAGCCAGTGCTCAGCAGGATGTAACTGGAGAGTTTGGTCTAATGGAGTGGTTTTGTCGGAGCGCAAGGCACTGATTCACTCCGAGCGGCGCGCAAAAGCgttcaagacaaaaaaaaacacacaaaaaaacccacaaaaaaacCAGAAAAAGCGCACGGATTGCGCACCGCCTGTGTTTTGTGTAGTGAGTGTTTATTGCAGTTATGCGGACTCGGAGCGGAGTTTTGCGCTTGGTGGCTCTTTTCACCCTCTTTCTTGTGTCAGTTGACGGTTTCCCCAGCAGAAAGCAGAGGATCAATGACCCTAAACCCAGAGGGAACACCGCTCTTACGgCTGGAGGTCAGGTTCGCTCTGTAGATGCTAGACGGACCCTGGAGGACCTTCAGGAGCAGAACCAGCTAAGCAGGAGCAGGTCACCTCCACGCCGACACAAAAGGAGATGGCCACAGTTTAGATCGGAGGGAGTTCTGCCCAAACCTGCACCTGAGGAAGAGGAGCCCTTCATCTTAGACCTGAAGAACTTCCCTGATCTTGCAAATGCAGATCTGGGCTCGCAGAATCCGAATATCCAGGTGACCATCGAAGTTGTGGACGACCCTCAGATGGAGGTCGAGATGGACCTGGCTAAAGAGGACAGGAATGACTGGCCTCTGAACTCCGAGGAATGGCTTGGCCACAAGAAACTCTTCTGGCCTCTCTTCTGGGAATACCACGACTCCAGCGAGGAGAGTGCTGGCCAGGCCAGTCTAGAGGAGAACGGCGATGACCTGAGCTACGGAGGAGAAGATTCCCTGCTGAGCGGAGTGGGAGTGGACTGGGACAGCCGATGGAAGGGCTGGGACTCGATGGAGAGTTATGATTATGAGGAAGAGGAGTGGAGCGACTGGTCCCCATGCAGCACCACCTGCGGCCATGGCACCCAGAAGAGGGTTCGATCGTGCGGCTACGCCTGCACTGCTACCGAGTCTCGCACGTGTGAACTGCAACGCTGTCCAGATGACCTGAATGCCGTGACAGAGCTCATTCCTCACGAGATGATGAATGGCACTGATGCCTTCGATACAGATGTGGACAGCTGTGAGAAGTGGCTCAACTGCAAGAACGACTTCCTGCAGAAGTATCTCCATCAGGTCCTGACTGAATTACCCAGCTGCCCCTGCGTCTACCCATCTGAGGTCGTCTACAGCGCCGTAAACATCTTCGACGAGAAGCTGCGCAAGACCTACAGATGGCGTGACGCCAGCGGCCCCAAAGAGCGCCTTGATATCTACAAGCCGTCTGCGCGGTTCTGCGTGCGCTCCATGTTGTCGTTCGACAGCACCACACTCGCTGCACAGCACTGCTGCTACGACGAGCACATGAAGCTGATCACGAGGGGCAAAGGTGCCGGAGCGCCTAACCTTATCAGCACTGAGTTCTCTCCGGAGCTCCATTACAAGGTGGACGTCCTTCCATGGATCCTGTGCAAAGGAGACTGGAGCCGCTTCCACTCGGTACGTCCTCCCAACAACGGATTGCAGTGCACGGAGAACCCTCAGGAGGACGTCTATATGAATGAGCTGGAGGAGGCTCGAGAGTACTGAGAGGCAAAGCTGTCTCGTCTAACAACTATAGATATATAGTATTTCGTTGCAAGTTACGACTGGAGTTATGTAACGTTTCAAAAAACGGCATCGTACACTGTTTATATACACCTCAACTGATATAACAGCCGGAACGAAGTACAGTAATGCAACAATCTCTATCTTCCGCACTTTTCCCCAGAGAGCCAGTTGAAGCAATCAGGGACTCTTTCAAACACCATCTTCTGGAACAGGTTCACTGTATTTATAGGGTTCATATCCTCGACCCTCCTTTTCTTGAAAGGAATTCCAGTCAGGCTGCTAAACTTGAGTCCAAGCAGAATGCCCGGTTGTTATCTTAGACTCAGTGCTCAGAGTTGGCGCTCGTCCAACGCAGGCAAGATCAATCCAAATAAATCAAACACGAGCCTGAGTGCCGTATGCACGTGGCTTCGAAATATTTCACAGCTCTTCCCGAGCTTGCGTGTTTCCCCAGATGTACTTGGAACCAGCGTCATACATAGTTTTCATCGGGTTTTAGGGACGATGGCGCTGGATCATAGTGATTCCAGAGAGGTCTGGTTTGTTTCATAAAAGGGCTGAAGATGCCGTTGTCAGGATGAAATTCTCCTTTTAACAAGAAGTAGGAATGTGCAAATATTATACACTCATATCAAGATAAAGGTCTAACCTTTTATCAAGGTTCATGATATTATAATACATCTGCGTTCCCCAAGGTCCTTCAGCTTCCCAAGGTAAAAGATGCATGCTGTAGATACAAAATACATAGCCTTAAGGCTCCCACCTCAGTGACAAGTATTTACACCCTGAAGAGTCTAGTTTAGTCCCTTTTTTTGAGAATGTTGATTGTATCCTCCTACACAAACATGCATGAAGTTTCTTCAAATTTGTCTGCAATTAAGGGTCCTTAGATCTCCTTAAATTATCTTCTAAAAAGGACTGTGTCCAAAAGACAAGTCAGCTGCCTTGATGTATTGCTGCCTATGCAGTCTTCGAAGACTTTGGGCCTACGAAGGTACAAACAAATGATTTGAGACACTCCCCAAAGGCAATAATCCATCACAGTGGTACTAACAGCTAGATAACACCCTCGCTAGATAATAgagcaaatattcaaatatgacTACAGATATTTCTACTTAGAAAGTTAAAACAGTTCCAAAAAATATTTGTCTATGCTGAGGTtcttcaatgctttttttttttggttactgtAGTGGATTAGATGCATGAGATTATGGGATATATAGGACAACAAagaatacatatacataatatatacacagCCACCAAAATGTTCCAGATGGTCTTGGCACACGCTCTTCTTCCAAAGGCTTCTTCAAGGGTCTTTGGACAGTTCTAGTTTTCTAAAAGGGTGCTGTTTGAAACCTTGTCTGAAAATGAAGCTGTCAGAACAGAACTGTCTGTTGTAGAGTTCGACATACAGCCCTTAAGGGTTTAACCTAAGGACCCTTAGAGTGCAGGCAGAATTATACACTTCAAGAAAAAATGATAAAGCTTTTAAGTATTCTTCGTTTGGTCCCTCTGAGAGAACCTCTATCAGACATTGtttcaagtagaacccctttcTGCGTGGGTACGCAGCATGTATTACACGTAAGGTTCCTTAATTTTTTGGTTTGTATCACTGGGAGAACCTTTAAAGATGCTACAGAGAACCCTATGACAGAGGGTTCCTCTATCACAGAGGGTTTCATGTAGAACCTCTTTCTGTACGACCAGGAAGCACATGTTACATCTAAGGATTCTTAATTCTTCAGTTTGTACCTCTGAAAACCTTTTTATAGATTTGATGGAATTTTTGGTTCGTCCCACTTGGAGAACCGATAAAGTTTCTATATGGAACCCTGCAACATGAAGAAGGTTTTCAGCAGGGGGTTCTGAGAGGGTTCCAAATAGAACCCCTTTCTAAATGAGTAGGCAGCATGTGTTACATCTAAGGAGGCTTAATTCTttagtttgtccctctgggagaATCTTTAAAGATTCTATGACAGGCCCTACTACAGATGGTTCTCCTATCAAAGAGGGTTCCAAGTACAAGCCCTTTCTGCCCTAGCAGTCAGCACAAGTTAGATCTTGATCACACTGTTTATCTTGGGAGCACAAATTCTCACCAAAAATGTCACCTACCTCAAAAGCCTCCTAAATGGACAGTATATGATATAACTAGTTGCAGTGTCTTACCTGAGTATTCACCACCCGtgaactttttcacattttatagtgttagaacctggaactgaaatagacTCTATTGGGATTATATGCCAtgagtttacacaaaatagcccataatagaACACcatctcctcagtgaagcatggtggtggaagcatcatgTTGAGAGCTGACCTTGGTCTTTTtacaaactatattgatttttctccTCACTTCAGTTTTATGGTGTATTTTGTGGAGATTCATGATGGAAAAGTTCAAGCGAGGTGAACACTTACGCACTGTATTGGCACCCCACCAAGGAGGAGCTACTAAGTTAGTTAATACCTGGGACATTGTTCTCATTGTAGtgtagatctctctctctctttctcttttaagACAGGAGGAACGTTTGGGGAACAAACAGAACATCTCTTTAAAGAACAATGAAAGTGTGCTTTGCAAATCCACCCTGAGTCCAAAAAGTATCAAAGCCCACTTGTACATACAGGGATGTTGTTTTAAGAGCTAAAGCTTCACCTTTCAGTCTGGGTGTTTATCTTGATCAGTGTCTTTGTGCGATGTTGAAAAAGAACACCGAGGGATTGGGCAACGCAAAGGCGTGTTGACAGGTGAATCTCGCCCCACTGTAAAAACATCCACGTTTGGGTGACATCTTAATGACTGAAATGAGACGTGACCCATCCTGAAATCCTGGAGCGCACCACTGCCTATCATGGCTGGCTTTCTTCCATCACATTCTCATATTCTTATATACTGACAGTCAAAAGATTTTGAACATGTGGAGTTTTTTTCCCTTACATTTTACCCACTATTGGCAAttaaataaggggaaaaaatatctaaatatgtttatttaaggaCTTCTTCTTCACTGTGCACTCTCAGATTCTAATGGGACTCTAAATGAACGCTTTATTAAAGGCGAGATTTGTCTTAAAGTTGATATTACACAGTGTTAGTATCAGTTGTAAGACAAATTTGTGTTGAGTGATCCGGTTAGATCTAGATttttgttttccaaaaaaaaggaagtcacaaacatttctcagttcacCTATTTATTACTTAGATTTTCTAATTCTATAGTATTTATCTTGAATGTTAATAGAGggtgtccaaaaacttttgactggcagtgtatgtccaagattgattttttttagcgCCTGCATGCAATACACTCTGGTTTCTAATAGCTATCTATAAGCAGACGTCACATGATGTGTTtgtgatttacttttttttgaattttaagCAGTGAGAATTTAATTATAACTTAAAAACACAAGCTGTGTGAAATAAAGGATCAGTGCACAAAGGCTTATTAAGTATATTAATAACCTTCCTGGATGTCAGTGATGTCTCAACTTGTGTCAGTAAGCATCTTTAACGTCTTTAACATGAGCACCCGTAAATGAACTGGATCTCCTGTTGAGTTAGCTTCACATTCCAGCGTACAGGATCTCATACGGTGCAGCTGTGACGGAGCTTTAATCTCTGCGTAGGAGCATCCCGCACGCTCTGTTATGGCATGTCCGCATCACGTTTCAGCGCCCTGGAATCCACGAGCCGTGTGGTATGCGCACAGGGCAGGAGGTGTGCGTGCGGCCACTGGGAAACGGCAAGAGCGGGGACACGGGGCACTCACGCTTGGCCTTGGTTTCTGGATTTCTCTGAAGCTGTGCCAGGCTTTTATGCTCCTGTTTCATTTTAGCACCGGCCCTTGATCCGAGTTGGTTTTCAAAGCGTCCTGTTAAAATAGACGCTCCATATTGTCATCAGTCTAAAGCTCAGTAAAATGGAGAGAGATTACAggtgaatgaaaaagaaatacgATGATCTACAACtgacaaataaaatggacagaCTCTAAATTTGGTGAAAGTTTACGTTTTTATGGTCTTTCAGGAAATTTTGACTGATTGAAGATTGTGTCACTTTTAAGAAACGTCTGAAAGAAaggcactttattttaaaaaaaaataaataagtggaTATATATCTTTgtatatattatcattatattgaATAATATCTGCAATGTACAATTTAGATTTTACATTCTTGTGTCATTATTGTAAAAGGGATAAATTACACCTCCTATGCTGCATTCTTAAAGGATTTTGTACGTGATGTAAAATATCGGGCATGTTacgtcatgtcatgtcatgtcaggtCATGTCTATtgttattagatttattattgtaCAGTATTTATTGTTGTCCAGGATCCATAAGATGCACTATATAAGAAGCTGAGTGAATCCCCCCATTTTTTTGGTTGGATGTTTTGTGAAAAAGGGAATGTGTTCGTGCCACgccacacaccacactacttcagttatatgcatttttttaccACCTCTGtccaaaatataataaatttaacaTTGACAGTTAATACGAATTTGTGGagtaatttgttttatttgctgttgGTGAAGCATGAACCTGATCCATTCATCTAATCCAAAAATAAA

Function

symbol description
ism2 Predicted to be located in extracellular region.

NR:

description
PREDICTED: isthmin-2-like

GO: NA

KEGG:

id description
K24435 ISM; isthmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926758.2 True 6437 mRNA 0.43 6 26929661 26955838

Neighbor

gene id symbol gene type direction distance location
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding downstream 31353 26846846 ~ 26898308 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding downstream 84526 26818900 ~ 26845135 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 134742 26741374 ~ 26794919 (-)
si:dkey-288a3.2 LOC108270389 coding downstream 525672 26363066 ~ 26403989 (-)
LOC113534079 LOC108269777 coding downstream 608036 26312809 ~ 26321625 (-)
sptlc2a sptlc2 coding upstream 3985 26959823 ~ 26989620 (-)
alkbh1 alkbh1 coding upstream 42593 26998431 ~ 27003962 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 527043 27482881 ~ 27489113 (-)
ston2 ston2 coding upstream 573025 27528863 ~ 27557994 (-)
kif13ba kif13b,LOC107583481,LOC107755780 coding upstream 838582 27794420 ~ 27842196 (-)
LOC113534208 NA non-coding downstream 9124 26916818 ~ 26920537 (-)
G172211 NA non-coding downstream 59042 26870347 ~ 26870619 (-)
G172207 NA non-coding downstream 99932 26829318 ~ 26829729 (-)
G172196 NA non-coding downstream 156611 26772132 ~ 26773050 (-)
G172016 NA non-coding downstream 334178 26595281 ~ 26595483 (-)
G172225 NA non-coding upstream 22628 26978466 ~ 27052034 (-)
G172635 nrxn3 non-coding upstream 510034 27465872 ~ 27491804 (-)
LOC117598276 NA non-coding upstream 808767 27764605 ~ 27768101 (-)
G172782 NA non-coding upstream 831484 27787322 ~ 27787728 (-)
G172784 NA non-coding upstream 877694 27833532 ~ 27834840 (-)
G171734 NA other downstream 1347134 25578939 ~ 25582527 (-)
G171569 NA other downstream 1670299 25258839 ~ 25259362 (-)
G171256 NA other downstream 2003437 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2385582 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3750150 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 609420 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 715785 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 943644 27899482 ~ 27910890 (-)
G172919 NA other upstream 956399 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1842311 28798149 ~ 28860011 (-)

Expression


Co-expression Network