LOC113534170 (fam179b,LOC108270205,LOC108266164,LOC108270136)


Basic Information

Item Value
gene id LOC113534170
gene name fam179b,LOC108270205,LOC108266164,LOC108270136
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23797542 ~ 23820314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926805.2
CGCTCGCGCTGCCAAGACTTGGCGTCACCATGGAAGCAGTTGGTTTGTGACATGCTGCGCCATTTTGATTccaaacacagcagcagcagcagcagcggcggCAGGAGCGTCGTGAAAATCAGCCTCGGACCCGCGAATAAAACTCCAAGCTGCAAGTCTGGAAGCTTGAGCACCTCGAGTGTGGAGTGAAACGCCTTGTGTGCTGATTGTAGCTGCGGACTGcgcttttttttgtaatgatgCTAATTCATAGCAACGCTGGAATGTGATGCCTGAACtctgtagtgtgtttgtgtgtgtgtttgtgtgcaagtTAGACTCCCAGCACGCTGAACTGACGACTAGCCCTAACTAGCTGCTTGTCCTGTAAAAAgaggctgtgttttttttaaatgttataaatgtgttgTTGTGATGAGTGTTGTAGGCTTGGCAACATAGCTAGCCAAACTCTTGCCAGAAACAATGTTAAGCGGTTCACATGGcagttatttttcttcctttctccgAGCTAGGTTAGGTTTGCTCCTGGATAGACTTAACCATGACACAGTTGGCTAGCTAACCAGGTTAAAATGACTAGCAGGTTGAGTTTGTTCATGTTGAAATGTGCTAACCAGTGCCTTAACTTTGGGTTTTTATCACTAAAGCTGGCAAAgctacaggtttttttttagaagacaTATTTACCTAATTGTATGTTTACTTGTTTTGCCACAACTCTGGCaaaatgtcagtgtgtagtgtttttgtTCCTTTACTTCCCCCTCAGTTGTATTTGGTCAGGGTATTAATGATATATCTGgcttttttcagcagtttgaCTTGAGTCTGtggttatttttgtatttattttttttttgtttttttaatagtgtgACATTTTCCCATGCTCTCGCATCAGACCTCTTTCTTAGTGACCACTTTGAGAAATCTGGAATCACACAGCCCTTGACAAGATGAGCTTTCTAAAATCTCAACAAATACATAGGCGCTTAGAAACAACCTGCAGTCTGTCAGTAAGCTTGGCCTTGGCCAGACTCTGACGAGAACAGTCAATGATGATTTATGGATTAATACCTCTGGAGTTACACGAACAACTCCTGGATCATGAGAACTACCAGAATCGAACAAATGGGGTAGAAGAGCTGAAAACCATCCTGTCCGAGCTGGACTTGAAAGCGGTTTCCTTTGACAGTATTGTGGAATTCATCTACTTTTTACACAAACTCCTGGATGACACCAACTTTAAAGTCTTATATGGCACTTTACAGGTCCTGAACCTCCTTGTTCAAAAGCTGGACTACGATGTGGACCGATATTACAAACAGATCGTGCACGTGGCTCTCAAAACCCTGGGAGACACGCGCACCGTTCCACGGAACGAATACATGAACATTTTTCGGCAGCTCATGAGGATCGTAGGGCCACAGAAAGTTCTGGACCTTGTAACGGGGCACCTGAAACACAAAAACTCAAGAGTAAGAGAGGATGTTCTCAACATCATTACAGCTGCCATGCTCGCGCACCCCAGGAAAGACTTCAACATCCCGCATCTGTGTTTTCTGGTTGCTCCTTATCTTGCAGACAGCAAGAAGAGGGTTCGACACGCAGCCCTGGAGCTCTTTGCCGTTTTCGATTACTGCCTTGACACAGGCAAGAAGCAGCCGATCATGAAGGCTATAGACAGGGTGGAGCTCACTGGTGAAGCTGAGGGCCTTATGGCTGCCGTACAGGCACGAAGGGCCAGGCACATCCTTCCTCGGCTATCTGCGGATGGTACAGTGGAATACGCGCTGGTTATCCCCAAACCTGGCCAGCGGCGCACGCCCCAGTTCGGCTCCGGAGCCGATCTGGACTGGATCCTTAATGGAGGGAGAGCGAACAGCGCGAGGAGTCACAGGACGGACGTGGACTCAGAAGGGCTGAGTGCTTACAGCAGCCTTGGATCCCTGACTGACGAGATGCCGTTACAGAGGAGGATAGTGAGTGCCGGCAAGGGCAAAAACAAGCTACCCTGGGAGAGATCGAGCCTTCCGTCTGCAGGAAATCAGGAGCCCTGCAGTGGATTGAATGGAAAGTTGTCCGATAAGtCAAGTCTTGAAGATCTCACTACCTCCATGAGACTGAATCAGGAAACTTGTGTCACCCAGTCTGGATTAGCAGAACCACTTCAGTCACACTCTTCTGGCCAGAGGAGAGAAAGCGCAGTCAGACTTCGCCGAAGCGGCAGCCTAGACTCAAACCCGGACATTTTCAAAGCAGCCGGCTCCAGCGATGCTGAGAGAGGTGTTCCCAGGACGTGTCGGCTGCCAGGGTCTGGAAACTCCAATGTGGAGCGTACTTTTTCTCTTCCGTCCAATCCCACTCCCCCTGGCTCCTTTCTGCTGCCCTCCTACCCTCTGGCCACTCTGCCAGGGGTCCAGTTAACTCCCACACTGTCTCGCAGATGCCATGCTGACTCCACGCTCTCCATGTCCAACACATGGCCCAACAATCGAGAGATGAGCCCACGACGGAGGGAGCCCAGTCCATGGAGGAATAACAATGGTGAGGCTGGCTCCACCAGGTGTTCTCCATTGCACACTTCCCGGACTAGTGTCGCGTCCTCCTCATCGTTCCCTCAGGCTCTGAACGCAGTCAGGTCTTCTCCACCCATCACCCCCATCACACAGCTGTCTGTACAGGATGCAGGGAACCAGAGAGATCAGCGTAGCAGGAATCTCCACCTCGACCTGACTGTCATGAGCCTGCAGGAACCGGATGAGGAGCCAGTGGACAAGGAGGAGATGATGAGCTCGCTGCGCTCCTTGCGTAACAGCGCAGCTAAGAAGAGGGCAAAGGCGAGCATGAGCGGCTCAGAGCCGGATCCAGACAGTCCGGACTCGGCCGTTAAACTCGAGCCAAACCTCGACTCGTCCTCTCAGACCTCTCCGTCTGTGACAAGCCCAGTGAGTGAGAGCAGCCTGTCCAGCCTCTATTCTCCTACCACTCCCACCATCAATGGCACCAAGAGCAGCCCTGGGAACTCGACAACAAAAACACGTATCGCTAGAGTGCCGTCTGGGAAAAAGAAAACTCCTTCCTCCATGGAAGCAAGTCCTCAAGGTGTCCAACAGCAGGAAAAGCTTCTTTCTGATGTGAGTGTCAGCGTTGTTGGTCAGAGAGTATCTTATTCTAACGGAGCAGCAGCGGAAGAGAAGCCAAGAGAAGCGTCTTCACCTCCGCATGTTAGACCTGCAGGTCGTGAGCCGCTCAGAGCTTTAAGACCCGCTAAAGGATCTCAGATACACAGCACGAAGGCCTCTGCTGTTAGCGACATGTCTGAGGGAGTAGTTGGAAGAGGAGTTTTTGGCTCCATGGTTCTTCCGAGCCGTCCCGAAGTGGCAGCATGTCCTGAGCAGGATGAGTCCATAAACAAAGCCTCATGGGAGCCACCAGCTGGAGTATATGGCCATGCTGTCTCTGGAAGTCAGGTCGATTCTGCTGACAGCCCTGAACCTGATGACGCAACGGAGAAGGTGAAGCTGTCCAAGTTTGCAAGGGATAAGATGCGCCAACATTGGTTAGAACAGCAAGAAGCCCAGCCTACGCCGCGAATGAGGCAGAGCCTTAgacatggaacagctgagctgGCCTCAGATGAAGCAGCATCTCTGAAAGAGTTGCAGCTGAACGGTAGCGTTTTACCCTCCAGTAAGACTGAAACCCTCACAAGGGAATCACCCACCAGCCCTACAAGTGCACAGGGACCCCAAAACCCACAAAAATGTTTCAGTCCCCATCATCAGCCGAGCCCCCCTACAGGCCTCCCTAGCAGACACACACTGCCTCGGCGAAGAAGAGCTCCCAGTCTGACCAGAGCACAGCCATCTCTCTCCAACAGCTCTGATGAAATCATGCCCATTACCCTAAAGAAGGATCCCAACGAGCAGGTGGAGTTGCGGCCATTCTCCAGGCCAGAGCTTGCCCTCACTCAGAGCTTCAGACTGCTTAACTCAGATGACTGggagaaaaaaatcGAGGGGCTCATTTTCCTACGCTGTTTGGCACGGTATCACTCCGATGTGCTTAGTAGTAAGCTTCATGATGTCTGCCTTGCTCTCATTCAAGAGGTTCGGAATCTGCGCTCTGGAGTGTCCCGCATTGCTGTGGTGACTTTAGGAGAGCTGTACTCTGGCCTGCAGAAGGGAATGGACCAGGAGCTGGAAGCAACAGCCAAAGTTCTGCTACACAAAGCAGGAGAGTCCAATGCTTTCATTAGGCAGGATGTGGATGCAGCACTGGACAGCATGGTGCAGAACTGCACACCTACACGCAGCATGAACGCCCTCCTCACTGGAGGACTCTGTCACTTAAACGCAGTCGTAAGGAAGTGCACTGCTCAGCACTTGACTTCTCTGGTCGAGAAAATCGGCACTGGGCGCTTATTGTCTGGAACTAAAGATCTCACTGACCGAATCTTACCTGCTGTCTCCAAGCTGGCGCAAGACTCTTCACAAGAAACCAGATATTTTGGCCGGCAAATGCTGCTGTTCTTGTCGTCTCACCGTGACTTTGATAAAATGGTGGAAAAGTACATCCCTGCCAAAGACCTGGCAACCATCAGGGACACCGTTGTCACTCTGAAGACCAAGGGACTGGGTGAGATGCCTCAGGACACTCCTTCAGCTCGAGGCAGGCGCTCCATATCAGGCGGTGGAATGGTGCGTGCCTCGTCTCTCACTCGCGAACCTCAGTTTTCCAGCAGCAAAGACAACAGTAAAGCTCAGTTCCACAGCATCGCAGACAAGACAGAGTATGTCAAGCGGCTCAAAGCCCTGCTGGCTTCAAAAGACTTCCGGGAGCGCATCAAGGGCATCGATCAGCTGGTGGCTGACTGTGAGGAAAACCCATATATGGTCGTGGGCAACATGTTCCCGGTCTTTGATGCTTTTAAAGAACGGCTGCAGGAGTCAAACAGCAAAGTGAACCTTTATGCGTTGGAGGCCTTACAGAAGATAATCACATTACTTAAAGACAACTTGGCCCAAGTGGTTTATATCCTTGTCCCAGCTGTAGTGGACAACCACCTCAACTCGAAGAATAACAGCATCTACACGGCTGCAACGGGTGCCATACATGCTCTGATCATTAACCTTGacaACACCCTACTTCTTCAGCCATTTTGCACAAAGGCACAGTTTCTCAGTGGGAAGGCTAAATTGGACCTTGTTGATAGAGTTGCAGAGCTGGTCAGAGAACTGTACCCTCGCAAGCCACAGCTGGTTGAGCAGAAAGCACTCCCTCTGCTTTGGCACCTCCTGGGCTCCTCCTGCAAGAGCGGCACGGTCCACGGCAGGAGCGGCACCATGAGAGGAGCCACCACCAACCTGTGCCAAGCTGCACGCTCACATGGGCCCGATGCTGCTAAATCAAGCTGCTTCACAGCCTTCCAACATCTTCAAGAGCCTGAATGAGATTCTGCAGACCCTCACACCCCTCTGAGATCTGTAAACCTCCGCATTAAAACTTACCCCAGCTGACAAACTACTTGAAAATAGAGATGTTCGCACATTTCTCACAGTGCctgcactttaaaataaataaataaaaaaaaagaatcaaactTTTATCACTTTGAATGCGCAGAAATGCTATGagtccttaaaaaaaaaaaatcctgaactAAAGGAATATAGAGTTTAGCTTATTGTCCATCAGGTTAAAGATTCCCAGGAGCTCTGCTCCTTTGGCACTTTGAATTAGTAACACTATCATGATAACTTTTGTCATGGTGACTTTAGGTATATATTGTTCTGTGATTGTTGCAGTTCTTCTTCTCTTTGTGAGTTTTACAAAATGTCGACATATCCTGAGGCAACGATGCAGAATGTAATTTTtgtgtcatgtgacttttctatGAGGAGTCTTAAATGGTTGTTTTAAACCTTTTGTGCATTTATGATTTACAAACACTTTTGTATTGTATAGCTATGAAGTGTAATGGCACAGTATTAGCTTCATGTATGCTATATTATATTGCAGTATGTAATGTGTCGTGTGTATAGATGAAAACTCTATAATGACTTATTAACTGATACGCCGGACCTGTCCTACTCTTTTTGCATGACCAAATATAGAGGTGGAGtgaaaagaatatatatattaaataaaatactagaataaaatatatatttctagtacaaaaatatattttgatgtATACAGAAATGAACTCTGGATGTAAGCAGCCATATTTTTGGTGGATGGTAACaggcaaaacaaaacatttgatgAAAGCTAGTTTCAAACTATTAGATATATTTCTAGTCTACACATGAATTTATGCCCAGGTCTGTAATTCAGTATAGTGCCAGTCTTTAAATACCTTTTTGGAGATCTAATGTTAATTTATATTGAACATGTTTCTCAACATGGTGTATGACAAAGATTGatctatataataaaatgttttatttcagtaaacCTTAATGATTTCATGGTTTCTATACATGCATGTGgtaagaagttaaaaaaaagagaggctttgACCCAAAAAAGGTCTCTTGCATATATTGCCTTCAGAGTGGCTTTAGTATGGGGCAATTTTGTTGCATAATTTGTAATGTGAGTTccacaaaaatgaaatgagatgcaaaaaaaaattttttcgcAGACAAAAATGTGGACCCGCCTGCATTTGTTTGTGGATCGCTGCATGTGCATTTACACATCATGCCTTTGAAGCCCATGTAGAAATTATCAGCTTGTCATAACATTCAAATG

Function

GO: NA

KEGG:

id description
K24886 TOGARAM; TOG array regulator of axonemal microtubules protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926805.2 True 6768 mRNA 0.48 22 23797542 23820314

Neighbor

gene id symbol gene type direction distance location
c10h14orf28 c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876 coding upstream 20226 23768992 ~ 23777316 (+)
ush2a ush2a coding upstream 77575 23510201 ~ 23719967 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding upstream 302158 23428300 ~ 23495384 (+)
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding upstream 689593 23067560 ~ 23107949 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding upstream 744868 23024656 ~ 23052674 (+)
fancm fancm coding downstream 532 23820846 ~ 23864133 (+)
slc25a47b slc25a47 coding downstream 58995 23879309 ~ 23883722 (+)
wdr25 wdr25 coding downstream 74534 23894848 ~ 23909635 (+)
trnah-gug_10 NA coding downstream 141670 23961984 ~ 23962055 (+)
trnah-gug_11 NA coding downstream 144534 23964848 ~ 23964919 (+)
G170716 NA non-coding upstream 15453 23779323 ~ 23782089 (+)
G170717 NA non-coding upstream 18315 23778269 ~ 23779227 (+)
G170610 NA non-coding upstream 422104 23375238 ~ 23375438 (+)
G170568 NA non-coding upstream 647458 23149542 ~ 23150084 (+)
G170567 NA non-coding upstream 648037 23148674 ~ 23149505 (+)
G170718 NA non-coding downstream 6749 23827063 ~ 23829186 (+)
G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding downstream 190035 24010349 ~ 24011349 (+)
LOC117598313 NA non-coding downstream 208011 24028325 ~ 24034062 (+)
G170904 NA non-coding downstream 215470 24035784 ~ 24036171 (+)
G171017 NA non-coding downstream 487540 24307854 ~ 24308329 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 775147 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 1977483 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2031169 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2123081 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 3266320 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 643152 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 1174179 24994493 ~ 25000619 (+)
G171329 NA other downstream 1183669 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 1356060 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 1438497 25258811 ~ 25318277 (+)

Expression


Co-expression Network