socs4 (socs4,LOC108270091,LOC107564995)


Basic Information

Item Value
gene id socs4
gene name socs4,LOC108270091,LOC107564995
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25369505 ~ 25371805 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926815.2
actcacacacactctcacacacacacacacacacacccaatgCCTCTTAACGCCATGGGACAATTCACCGCCTGAGGACTAACTATTAACATCTTACATTTTACACTCTGTTGTTGAGTTTGAAGCACGTGAAGCGAATCGTCCACATTATGTCAGAGAAGAAATCCAGACCTTCAGATGCACGTCCCAAAAACCTGCGTAGCTGGAGCGTGGACAGCTACATCCGCAGCGTTAAGAAGCGCTCGCGTGGTCCACGCCATGACGCCCCTGCcagaggagaggaaggagacaCGCCAGATGAGCAGAACGTCCGCTCAACTTCCTGTCCCCAGAGACGGAGGGAGAGGAAGTGCAGCTGCACGGCTATCGGAGACGGAGACATAGACTCCATGTGCAGAAAAGCGCTGTCTCGCCGATCTCTCAGACAGAAGTTCCAGGATGCAGTAGGGCAGTGTCTCCCTCTCCGTggtcaccatcatcatcaccaccaccatcatcaccatcatcatcatcagagcgGCTCGTCACGACCGTTCTCGGTGCTCCTGTGGTCCAAGCGCAAGATTCACGTGTCCGAGCTTATGGAGGACAAGTGTCCGTTCTCGCCGAAGTCCGAACTGGCGCAGTGTTGGCATCTTATCAAGAAGCACGGCACACATCAGAATGCATCATTAGTCCTAGAGGATCAAAAAAGCAGAAGGTTGTCCTCGTCCCCTTCGACTTTTATCTCCTGGGAGGAAGTCAGTTCTAATGGTGCTTCCAGCTTGACTGATTGGGACGCATCCTTTATTCATGGAGCTCCCCAGTGTTGCGCACACTCCGACTACATCTTAGTGCCTGATCTTCTTCAAATCAACAACAGCCCATGTTATTGGGGCGTCCTAAACCGCTTTGAGGCTGAGCAGCTCCTAGAAGGCCAGCCTGAAGGCACCTTCCTGCTTCGAGACTCTGCCCAGGATGACTATCTTTTCTCGGTCAGCTTCAGGCGCTACAGCCGCTCTCTGCACGCCCGCATAGAGCAGAGTGGCAAGCGCTTCAGCTTCGACTGCCGCGATCCCTGCATGTACAGAGACGTCAGTGTCACAGGCCTGCTGAAGCACTACAGCGATCCGGCCACATGCCTGTTCTTTGAGCCGCTCCTGTCTCGCCCCCTGCCCAGGAACTTCCCCTTTTCCCTGCAGCATCTGTGCAGGGCGTTAATCTGTAGCTGCACTACATATCAGGGCATCGAGACTTTGTCCCTGCCTCATACACTCAGGGATTACCTCAGGCAATACCACTTCAAATGTGACGGGGCTTGTGATGTGTGACGAGCTACACAGTCAGGGCAAATGGACTTGTCTCAGAATCATAAAGAATGTGGGTTCTTGAGTGGTGTAATTTTTTACAGACGATCGCAAAGTCAAATGGCAAGGTTACAGCCATCTGTCCGAGTTCGAAAAAGCATTATTGTCCCTGATTTTCTGGGTGGGACGATGGTCTTCCTTTTTCCAATCAGAGTTAGCCAATCTTGGGCCTCTATCAGCTCATTTATACAAAACAGGGtaataatagtaacaaaaaaaactaacaaaaaatgACTACAA

Function

symbol description
socs4 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS4 (suppressor of cytokine signaling 4).

NR:

description
PREDICTED: suppressor of cytokine signaling 4-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926815.2 True 1586 mRNA 0.51 3 25369505 25371805

Neighbor

gene id symbol gene type direction distance location
wdhd1 wdhd1,LOC107583614 coding downstream 7644 25336546 ~ 25361861 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding downstream 34246 25320510 ~ 25335259 (-)
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding downstream 117202 25240086 ~ 25252303 (-)
txndc16 txndc16 coding downstream 163032 25182416 ~ 25206473 (-)
nid2a nid2,wu:fb77a09 coding downstream 262746 25056364 ~ 25106759 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 18126 25389931 ~ 25396747 (-)
ros1 NA coding upstream 26285 25398090 ~ 25418463 (-)
zgc:85722 LOC108270090,LOC108443409 coding upstream 59518 25431323 ~ 25468569 (-)
LOC117598272 LOC108270379 coding upstream 149559 25521364 ~ 25533476 (-)
LOC117598273 NA coding upstream 161671 25533476 ~ 25534660 (-)
G171573 samd4a non-coding downstream 77567 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 80003 25287152 ~ 25289502 (-)
G171572 NA non-coding downstream 82724 25286042 ~ 25286781 (-)
G171543 NA non-coding downstream 97743 25267902 ~ 25271762 (-)
G171545 NA non-coding downstream 103535 25264368 ~ 25265970 (-)
G171594 NA non-coding upstream 17778 25389583 ~ 25389871 (-)
G171710 NA non-coding upstream 97699 25469504 ~ 25470074 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding upstream 132583 25504388 ~ 25509620 (-)
G171755 NA non-coding upstream 401699 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 605991 25977796 ~ 25978027 (-)
G171569 NA other downstream 110143 25258839 ~ 25259362 (-)
G171256 NA other downstream 443281 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 825426 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2189994 23148743 ~ 23179511 (-)
G170435 NA other downstream 2505738 22855494 ~ 22863767 (-)
G171734 NA other upstream 207134 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2193453 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2299818 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2527677 27899482 ~ 27910890 (-)
G172919 NA other upstream 2540432 27912237 ~ 27912544 (-)

Expression


Co-expression Network