bcl11ba (bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755)


Basic Information

Item Value
gene id bcl11ba
gene name bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26741374 ~ 26794919 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926839.2
TGCCACTGTAGCTGCCACTGTAGCTGCCAGTGTAGATGCCAGTGTAGATGCCAGGCAGGGCGATGTCCCGTCGCAAGCAGGGAAACCCTCAGCATCTATCACAGAGGGAGATTATAAGCACTGAAGCTGAGCATGTGGATGCAGACCTGTCGCTGGCCGAGCTCGCCGGCCACCACACCTCCATGCTGCTGGACCCCAACATGGTCGCCCCTCTGCCCCCGGGCCTCGGAGACCACGACCTCCTGACGTGTGGCCAGTGCCAGGAGACCTTCCCACTGGGCCACATCCTGCTCTTCATTGAGCACAAGAAGAAGCAGTGCCATGGCCCCGCCGGCACCCACGGCTGCTATGATAAGATGGCGGACCGCAGCAGCCCCTCGCCGCCGCGCACCGAGCTGAGAAAGGTGGAGGAACCGGTCGAAATCGGAATCCAGGTGACACCCGAGGACGAGGATGAGAGACTGCTCACGCCTCTGAAAGGAATTTGCCCTAAGCTAGAGAGCGGCCTGGCAGGTAGAGATGAACCTTCGAGCTACATATGCACAACATGCAAGCAACCCTTCCCCAGCGCCTGGTTCCTCCTTCAGCATGCCCAGAACACCCATGGGATCCGTATCTACCTGGAACCCAATGGCTCCAACACTTCGCTTACTCCCCGGATCACTCTTCCTCCTCCAATTGGTGCTGAGTCCATACCCCAGTCCCCTCTGACCAACTTCTTAGGGGACAACAACCCATTCCATCTGCTCCGGATGACCGGGCCGCTGCTCCGAGAACCCACACCGGGCTTTGTTGAGAACCGTCTCCCAAACACACCCCCCTTTGTTAGCCCCCCTCCACGCCACCATCTAGATCCCCATCGCCTGGAACGCCTTAGCGCCGAGGAAATGGGTTTGATTTCCCAGCATCCCAGTGCCTTCGAGAGAGTGATGCGCTTGACACCCATGGCCATGGAGACCCAGTCCATGGATTTCTCGCGTCGTCTGCGAGAGCTGGCGGGCAACAACAACTCCACCCCTCCGCTCTCACCCAGTCGTGCCAACCCTATGCACCGCCTGCTCAATCCCAACCCCTTCCAGCCTAACCGCAAGTCACCCTTCCTGAGCACTCCTCCACTGCCGCCAATACCCCCAAACAGCACCACACCACCTCAGACACAGGACAAGAGCAAATCCTGTGAATTCTGTGGGAAGACCTTCAAGTTCCAGAGCAACCTGATAGTGCACCGGCGAAGCCACACAGGTGAGAAGCCTTATAAGTGCCAGCTTTGTGATCACGCCTGTTCTCAAGCCAGCAAGCTGAAGCGCCACATGAAGacccacatgcacaaacctggCTCAGTGACAGGTCGCTCAGATGATGGCCTCTCTACTACCAGTTCACCTGAGCCAGGTACTAGCGATGTCACAGGAGATCCCATGAAGAACAGGGATGGTGACTTCCAAGGCGAGGGAATAGGGCCAGAgaatgaagaagaggaagaggaggaagaagaggaggaactaGAGAATGAGAGTAGGCCTGAGTCAAATTTCAGTATGGACTCGGAGTTAAGCCGTAACAGGGAGAATGGCTCCAAACCCCCAAATGATGAGAAGAGCCTCTCCTTGGGTAAAATGGTAGACAATGTGGGGCTGAACTCTATTCAGCAGTACAATAACTTGATCGTTGACAATCGTAAAAGGCTTCCCTTCTCAAAGAGGGGCtctgatggacagagagacacaggagaTGAGGACTCGGTGGTGGAGGAAATGGATCATGTGGAGCGGGCCACCGTGAACGGCAGGAACTGTGGCTCGGGCGATTCTTTCTCAGGCCTGTTCCCCCGCAAGCCCACCCCTATCACCAGTCCCAGCCTCTCCAACACCTCCAAAAGGATCAAAATAGAGAAAGACTTGGACATGCCCCCAGCGTCTCTAATCCCCTCAGAGAACGTCTACTCCCAATGGCTGGTGGGTTATGCAGCGTCACGGCACTTCATCAAAGACCCCTTCCTTGGCTTCACTGATTCCAGACAATCGCCTTTCGCCACCTCCTCCGAGCACTCGTCAGAAAATGGCAGCCTACGGTTCTCTACTCCTCCTGGGGACCTGCTGGATGGGGGCCTTTCTGGACGCAGTGGCACTGCCAGCGGTGGCAGCACGCCTCATCTGTCTGGAGGCCCGGGACCAGGACGTCCTAGCTCTAAAGAGAGCCGGCGCAGCGACACGTGTGAATTCTGTGGCAAGGTTTTCAAGAACTGCAGCAACTTGACAGTGCACCGGCGCAGCCACACGGGTGAGAGGCCCTACAAGTGCGAGCTGTGCAACTATGCCTGCGCGCAGAGCAGCAAGCTCACCCGCCACATGAAGACGCACGGGCAGCTCGGTAAGGAAGTGTACCGCTGTGACATTTGCCAAATGCCCTTTAGCGTCTACAGCACGCTAGAGAAACACATGAAAAAGTGGCATGGCGAACATTTGATGACGAACGAGGTCAAAATTGAACAAGCTGAGAGAAGCTAAGCCAGATTTCCCATTTTGCCTCACAATTCCTTGAATATAAAAAAGGGTAGCTGGATACtctgtttgttttccttttcaaataataataataatgatgatttGAATTAGATTTGCCTAAGAAACTGCCATctgagaaaaaagacagaagctAAGGGAAATTGGAGCGGGTCTAAACTGCCtaatttggcattttttttttcagtctgtcaGTCTAATAATGGACGAATTAGATGATGTTTAAATGGAGCCTTTAACTGTGCaataatttctgtatttattggATTTCGTAATGTTTTGGCATGTGCAggtgcatttttctttcttttttttgttcattgtcttacttttaaattcaaatgctgtgattttttttgttgttgtttttaaacccagacaaaacaaaaacctgagATTTAATTTTTATCCACAACAGAGTACAATTTGAGAGATTTTTAGGCCGCTGCTCATGAAATTGTATATTTAAGCTACATGTAATTTCTTGAAGAGAAGCCGGGTTCAATCTTCGATTTTTAAAGAAACTGAGAAAGCtatcttttgtttgtttgtttgtttgtttgattagtCATATTAGGATATAAGCGGACAACAATCCTTAGACTTTGTAGCGTGAACTGATTTCAGACATGTCAATCTAATTGGAAATGTAGCACTGAATGTCGGATGTGACAGTAAATCTGGAGGATTGTGGAGCTCGGGTTCTACTTAACGCAGAGAAGAAAGGTAGTTCTGGTACTAAGTACCAATCCAGACAAGACCAATAAAGCAAAAATTTTGCTTCAGTTCTTGCTCAGATGCTAAAAAGTGTACGACCGTAATTAATGACAACaggtctttttcttttctcttctctaatGCTGACTCTTTGGTTGCTCGTTTCTCCAAGTCGTTTGCTCCAACATTTCCTGAGCAGGATGGCTAGAGCAAACTCCGACTATCAACGCGACTACCTACCTAGCTATGACTAGCGCTATGTTTTTACATCAACGTGGATAATTATAACCACACTGACATTCCACAGACAGCCATACGGTCTTATATGGGTTGATATCGAAGATTATGCAGGAGAAATACTATTTATTATCTTAGCTAGCACCTCTGATTCTAATGATTTGATGTACATTGATGAACGTTTGGGGCGAAATGTTGAAGCGATTTAGCCAGATTAGCAGAAAGATTCAGTCATACACTCATTAATCATATGTCAAAGtgcatttttatgtatatacCAATTTGCAATCATTTTgagaattaaatttaaaatgtactgtaaaGGTGAATACATACACAAGTCGTATGCacggaaaaaaaatatgttttaatctgtttaagcGAAAACAGTaagactttctttttctttctctcttctcattCAGGACTTCCTGTGATGTGTAGTTGAAGTAGCAACACGCATAAAGAATGCGCAGCTGAATTTTTTAAAGCTCCCCTTTCCTTTCctcccccccccttttttttctctcaacgATCACTCCCATCACCTAAATCACAACCTCGATTCGTATTTTACCACACGAGGGCCAACAGTTTATAGAATCGAGGAGATatcatggttaaaaaaagacagaagaagaaaaagaagagagaaatcaGCCGCATCTCTTTGCAGTTCGTCCCCGCACTTTATGATTTGTTTTGTGCATTCACGACTTCACGGAGAAAACGGCTTCTGAGCAAGAAATTACGCGGAAAAAGGATTTTTAGTTTTGCGAAAGGGATCATCTGAGATTCAAGTGCCCGTGTTGCAAGGCTTGGCTTTCACAACACCGGCActataaaagtgaaattaatttatttggaCGGTTTTTGTACTGCCGCATCAATTTGACATGAGTGTGCcttgaatactgaatactgatcTTCCTATTTATTGTCTCGCAAAAGACAAAATGCAacgtttttttttgtgcaaaaaaaaaatatgtccGTAGATTTAATCTGCTTCTAAAAAAGGAACGAATCAGCGATCATAAATAATTCTTGAATAAAGATTCTTGATAAAGCGTAAACAGCACAATAgtgatgtgtctgtgtttgtagatatgtatgcatatgtacatatagcacaaacacacacacattatagacttatatatgtatatttcttCACTTCAGGATACGATGGAATCCCTTGGTAAAAACTGTACATTGTTttccagaagtttttttttttttttacatttttttttgctacaaaTAGACAAGGAAGAGACTGGACGAACATCAGGAACtacagaaactaaaaaaaaaaagactttagtGCACTCTGTCTTAAAATACGTTTACAGTATTGAAACAAGTACAAGGGTAAAATgatatttctgtgtatgtgtgttttaaacaaacaagtatTTTTTcgtttttggttgtttttttttttttttttttttgcttataaaGTTTCTCTGAATGCCACAGTGGCTATGTGTATATTGGTTTTTTGGTGACGGGgttttagtatatatatataaatatataaatataaatatatatattacattttttttcttgtttactgTAAAAGTATACCAGTATTTGTAATATTGGAGAATGCCTGggcattttacaaaaaaaaggaaaaaaaaaaaagtttttttaatgatttttttgtttgtttaattttgcagTCCAATTTAAATGGTGGGTCtcgattct
>XM_026926840.2
TGCCACTGTAGCTGCCACTGTAGCTGCCAGTGTAGATGCCAGTGTAGATGCCAGGCAGGGCGATGTCCCGTCGCAAGCAGGGAAACCCTCAGCATCTATCACAGAGGGAGATTATAAGCACTGAAGCTGAGCATGTGGATGCAGACCTGTCGCTGGCCGAGCTCGCCGGCCACCACACCTCCATGCTGCTGGACCCCAACATGGTCGCCCCTCTGCCCCCGGGCCTCGGAGACCACGACCTCCTGACGTGTGGCCAGTGCCAGGAGACCTTCCCACTGGGCCACATCCTGCTCTTCATTGAGCACAAGAAGAAGCAGTGCCATGGCCCCGCCGGCACCCACGGCTGCTATGATAAGATGGCGGACCGCAGCAGCCCCTCGCCGCCGCGCACCGAGCTGAGAAAGGTGGAGGAACCGGTCGAAATCGGAATCCAGGTGACACCCGAGGACGAGGATGAGAGACTGCTCACGCCTCTGAAAGGAATTTGCCCTAAGCTAGAGAGCGGCCTGGCAGGTAGAGATGAACCTTCGAGCTACATATGCACAACATGCAAGCAACCCTTCCCCAGCGCCTGGTTCCTCCTTCAGCATGCCCAGAACACCCATGGGATCCGTATCTACCTGGAACCCAATGGCTCCAACACTTCGCTTACTCCCCGGATCACTCTTCCTCCTCCAATTGGTGCTGAGTCCATACCCCAGTCCCCTCTGACCAACTTCTTAGGGGACAACAACCCATTCCATCTGCTCCGGATGACCGGGCCGCTGCTCCGAGAACCCACACCGGGCTTTGTTGAGAACCGTCTCCCAAACACACCCCCCTTTGTTAGCCCCCCTCCACGCCACCATCTAGATCCCCATCGCCTGGAACGCCTTAGCGCCGAGGAAATGGGTTTGATTTCCCAGCATCCCAGTGCCTTCGAGAGAGTGATGCGCTTGACACCCATGGCCATGGAGACCCAGTCCATGGATTTCTCGCGTCGTCTGCGAGAGCTGGCGGGCAACAACAACTCCACCCCTCCGCTCTCACCCAGTCGTGCCAACCCTATGCACCGCCTGCTCAATCCCAACCCCTTCCAGCCTAACCGCAAGTCACCCTTCCTGAGCACTCCTCCACTGCCGCCAATACCCCCAAACAGCACCACACCACCTCAGACACAGGACAAGAGCAAATCCTGTGAATTCTGTGGGAAGACCTTCAAGTTCCAGAGCAACCTGATAGTGCACCGGCGAAGCCACACAGGTGAGAAGCCTTATAAGTGCCAGCTTTGTGATCACGCCTGTTCTCAAGCCAGCAAGCTGAAGCGCCACATGAAGacccacatgcacaaacctggCTCAGTGACAGGTCGCTCAGATGATGGCCTCTCTACTACCAGTTCACCTGAGCCAGGTACTAGCGATGTCACAGGAGATCCCATGAAGAACAGGGATGGTGACTTCCAAGGCGAGGGAATAGGGCCAGAgaatgaagaagaggaagaggaggaagaagaggaggaactaGAGAATGAGAGTAGGCCTGAGTCAAATTTCAGTATGGACTCGGAGTTAAGCCGTAACAGGGAGAATGGCTCCAAACCCCCAAATGATGAGAAGAGCCTCTCCTTGGGTAAAATGGTAGACAATGTGGGGCTGAACTCTATTCAGCAGTACAATAACTTGATCGTTGACAATCGTAAAAGGCTTCCCTTCTCAAAGAGGGGCtctgatggacagagagacacaggagaTGAGGACTCGGTGGTGGAGGAAATGGATCATGTGGAGCGGGCCACCGTGAACGGCAGGAACTGTGGCTCGGGCGATTCTTTCTCAGGCCTGTTCCCCCGCAAGCCCACCCCTATCACCAGTCCCAGCCTCTCCAACACCTCCAAAAGGATCAAAATAGAGAAAGACTTGGACATGCCCCCAGCGTCTCTAATCCCCTCAGAGAACGTCTACTCCCAATGGCTGGTGGGTTATGCAGCGTCACGGCACTTCATCAAAGACCCCTTCCTTGGCTTCACTGATTCCAGACAATCGCCTTTCGCCACCTCCTCCGAGCACTCGTCAGAAAATGGCAGCCTACGGTTCTCTACTCCTCCTGGGGACCTGCTGGATGGGGGCCTTTCTGGACGCAGTGGCACTGCCAGCGGTGGCAGCACGCCTCATCTGTCTGGAGGCCCGGGACCAGGACGTCCTAGCTCTAAAGAGAGCCGGCGCAGCGACACGTGTGAATTCTGTGGCAAGGTTTTCAAGAACTGCAGCAACTTGACAGTGCACCGGCGCAGCCACACGGGTGAGAGGCCCTACAAGTGCGAGCTGTGCAACTATGCCTGCGCGCAGAGCAGCAAGCTCACCCGCCACATGAAGACGCACGGGCAGCTCGGACTTCCTGTGATGTGTAGTTGAAGTAGCAACACGCATAAAGAATGCGCAGCTGAATTTTTTAAAGCTCCCCTTTCCTTTCctcccccccccttttttttctctcaacgATCACTCCCATCACCTAAATCACAACCTCGATTCGTATTTTACCACACGAGGGCCAACAGTTTATAGAATCGAGGAGATatcatggttaaaaaaagacagaagaagaaaaagaagagagaaatcaGCCGCATCTCTTTGCAGTTCGTCCCCGCACTTTATGATTTGTTTTGTGCATTCACGACTTCACGGAGAAAACGGCTTCTGAGCAAGAAATTACGCGGAAAAAGGATTTTTAGTTTTGCGAAAGGGATCATCTGAGATTCAAGTGCCCGTGTTGCAAGGCTTGGCTTTCACAACACCGGCActataaaagtgaaattaatttatttggaCGGTTTTTGTACTGCCGCATCAATTTGACATGAGTGTGCcttgaatactgaatactgatcTTCCTATTTATTGTCTCGCAAAAGACAAAATGCAacgtttttttttgtgcaaaaaaaaaatatgtccGTAGATTTAATCTGCTTCTAAAAAAGGAACGAATCAGCGATCATAAATAATTCTTGAATAAAGATTCTTGATAAAGCGTAAACAGCACAATAgtgatgtgtctgtgtttgtagatatgtatgcatatgtacatatagcacaaacacacacacattatagacttatatatgtatatttcttCACTTCAGGATACGATGGAATCCCTTGGTAAAAACTGTACATTGTTttccagaagtttttttttttttttacatttttttttgctacaaaTAGACAAGGAAGAGACTGGACGAACATCAGGAACtacagaaactaaaaaaaaaaagactttagtGCACTCTGTCTTAAAATACGTTTACAGTATTGAAACAAGTACAAGGGTAAAATgatatttctgtgtatgtgtgttttaaacaaacaagtatTTTTTcgtttttggttgtttttttttttttttttttttgcttataaaGTTTCTCTGAATGCCACAGTGGCTATGTGTATATTGGTTTTTTGGTGACGGGgttttagtatatatatataaatatataaatataaatatatatattacattttttttcttgtttactgTAAAAGTATACCAGTATTTGTAATATTGGAGAATGCCTGggcattttacaaaaaaaaggaaaaaaaaaaaagtttttttaatgatttttttgtttgtttaattttgcagTCCAATTTAAATGGTGGGTCtcgattct

Function

symbol description
bcl11ba Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in thymus. Human ortholog(s) of this gene implicated in immunodeficiency 49. Orthologous to human BCL11B (BAF chromatin remodeling complex subunit BCL11B).
bcl11b Enables sequence-specific double-stranded DNA binding activity. Involved in hematopoietic stem cell migration and lymphoid lineage cell migration into thymus. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in neuron projection. Predicted to be active in nucleus. Implicated in immunodeficiency 49.

NR:

description
PREDICTED: B-cell lymphoma/leukemia 11B isoform X1

GO: NA

KEGG:

id description
K22046 BCL11B; B-cell lymphoma/leukemia 11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926839.2 True 5198 mRNA 0.45 3 26741374 26794919
XM_026926840.2 False 3667 mRNA 0.49 4 26741374 26794919

Neighbor

gene id symbol gene type direction distance location
si:dkey-288a3.2 LOC108270389 coding downstream 337385 26363066 ~ 26403989 (-)
LOC113534079 LOC108269777 coding downstream 419749 26312809 ~ 26321625 (-)
cx52.7 LOC108269563 coding downstream 1060633 25679314 ~ 25680741 (-)
manea LOC108270006 coding downstream 1071399 25664338 ~ 25669975 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding downstream 1080719 25651808 ~ 25660655 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding upstream 23981 26818900 ~ 26845135 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 51927 26846846 ~ 26898308 (-)
ism2a ism2,LOC108413947,LOC107583490 coding upstream 134742 26929661 ~ 26955838 (-)
sptlc2a sptlc2 coding upstream 164904 26959823 ~ 26989620 (-)
alkbh1 alkbh1 coding upstream 203512 26998431 ~ 27003962 (-)
G172016 NA non-coding downstream 145891 26595281 ~ 26595483 (-)
G171874 NA non-coding downstream 682865 26058245 ~ 26058509 (-)
G171864 NA non-coding downstream 763347 25977796 ~ 25978027 (-)
G171755 NA non-coding downstream 962408 25773504 ~ 25778966 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 1231754 25504388 ~ 25509620 (-)
G172207 NA non-coding upstream 34399 26829318 ~ 26829729 (-)
G172211 NA non-coding upstream 75428 26870347 ~ 26870619 (-)
G172212 NA non-coding upstream 99849 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding upstream 121899 26916818 ~ 26920537 (-)
G172225 NA non-coding upstream 183547 26978466 ~ 27052034 (-)
G171734 NA other downstream 1158847 25578939 ~ 25582527 (-)
G171569 NA other downstream 1482012 25258839 ~ 25259362 (-)
G171256 NA other downstream 1815150 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2197295 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3561863 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 770339 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 876704 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1104563 27899482 ~ 27910890 (-)
G172919 NA other upstream 1117318 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 2003230 28798149 ~ 28860011 (-)

Expression


Co-expression Network