slc25a47b (slc25a47)


Basic Information

Item Value
gene id slc25a47b
gene name slc25a47
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23879309 ~ 23883722 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926864.2
GGAATAATATCTACAGTGTTATTTTTGTGTGGCATTCAAGGTTTTgctagttagccagctagctagctacagtaGCTACAGTAGTGGTGCTATGTCTTTGTGTATGGAGAGCAGACATGCATGTAGCAGACTTCATTGCCGGCTCTGTTGGAGGAGCTTTTGGAGTGGCAGTGGGCTATCCTCTGGACACTGTTAAGgtCAGGATACAGACACAGAGGAAATTGGTTGGGGTTTGGCAGTGCATTCACACAACCTGCAGGAATGAAGGGGTGTATGGCTTCTATAAAGGCATGTCGATGCCCATGACTACAGTCTCTATCAGCTCGTCTGTGGTGTTTGGCACATACAGGAATGCGCTTCAGGTGTTGCACCACCTGCGGGGTAAAAGTGCAGATGCCCCCCGTGCCAAACAGGACATCTTTCTAGCAGGCTTCGCTGGGGGGATTGCTCAGGTTTCAGTAATGTCTCCAGCGGACATTGTGAAAGTGCGTCTTCAGTGTCAGACCCAACTGTATCAGGGATCTGACCTCAAATCTAGGCCTAAATACCACGGGCCTGTACACTGTCTTTTAACCATCACCCGTGAGGAAGGAGTGCTGGGCCTTTACAAGGGAGCCGGAGCCTTAGCGCTAAGAGACGGTCCATCTTTCGCCACCTACTTCCTTGTCTATAACACTGTCTGTGATTGCCTGTCTCTGGACAAGAATGCGCAGCCAGAGTGGAAGGTGGTGATGCTTGCTGGAGGATTAGCAGGAATGTGTGCCTGGAGTGTTGGGACCCCCATGGACGTGATAAAGGCCCGCTTACAGACTGACGGTGTGGGCAAGAGACACTACAGAGGATTTTTTCACTGCATAACAGAAAGTGTCCGAACTGAGGGAACCGCCGTTCTTTTTAAAGGCCTTATGCTGAATTGTGTACGCGCCTTCCCAGTCAACATGGCTGTTTTTGCCATGTATGAGCTGATCATTCGCTTTCTACGAACAAAGTCGTAGGTCATTCTACTTATCATACAGCACTTATCATGTATAAGCAGCAATATCACACCATGAATATGAGAAAACTGGTGAGAATTTAGAAAATCATTCTTGAGTGACAAACCTAGTTTTATGGTGAACTTAAGGAAAGTTTATTAATGACGTTGTCTAGTttgcattgatttgcag

Function

symbol description
slc25a47 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

NR:

description
solute carrier family 25 member 47-B-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15123 SLC25A45_47; solute carrier family 25, member 45/47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926864.2 True 1166 mRNA 0.47 6 23879309 23883722

Neighbor

gene id symbol gene type direction distance location
fancm fancm coding upstream 15176 23820846 ~ 23864133 (+)
LOC113534170 fam179b,LOC108270205,LOC108266164,LOC108270136 coding upstream 58995 23797542 ~ 23820314 (+)
c10h14orf28 c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876 coding upstream 101993 23768992 ~ 23777316 (+)
ush2a ush2a coding upstream 159342 23510201 ~ 23719967 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding upstream 383925 23428300 ~ 23495384 (+)
wdr25 wdr25 coding downstream 11126 23894848 ~ 23909635 (+)
trnah-gug_10 NA coding downstream 78262 23961984 ~ 23962055 (+)
trnah-gug_11 NA coding downstream 81126 23964848 ~ 23964919 (+)
trnay-aua NA coding downstream 81312 23965034 ~ 23965106 (+)
LOC113533835 dlk1 coding downstream 95668 23979390 ~ 23982635 (+)
G170718 NA non-coding upstream 50123 23827063 ~ 23829186 (+)
G170716 NA non-coding upstream 97220 23779323 ~ 23782089 (+)
G170717 NA non-coding upstream 100082 23778269 ~ 23779227 (+)
G170610 NA non-coding upstream 503871 23375238 ~ 23375438 (+)
G170568 NA non-coding upstream 729225 23149542 ~ 23150084 (+)
G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding downstream 126627 24010349 ~ 24011349 (+)
LOC117598313 NA non-coding downstream 144603 24028325 ~ 24034062 (+)
G170904 NA non-coding downstream 152062 24035784 ~ 24036171 (+)
G171017 NA non-coding downstream 424132 24307854 ~ 24308329 (+)
G171019 NA non-coding downstream 425908 24309630 ~ 24309966 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 856914 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2059250 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2112936 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2204848 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 3348087 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 579744 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 1110771 24994493 ~ 25000619 (+)
G171329 NA other downstream 1120261 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 1292652 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 1375089 25258811 ~ 25318277 (+)

Expression


Co-expression Network