si:ch211-266g18.9 (LOC108270005)


Basic Information

Item Value
gene id si:ch211-266g18.9
gene name LOC108270005
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25620016 ~ 25633883 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926867.2
gacactagcTTCCTCTCAGGATGAGTCACATGGCAGGGTCAAAATACATTCACAGAAGAGTAGGACACTACTGCAGAAGTTTGAGAACTACTTATCAAATCATTCAAGCTGAAACTTTATATTTAGTGTGTTAGAAGGGATACactgaagaattttttttttacttctgattTCTGCATTTATCGTCTGATTTTTCTCTAAAACAATGCACAATTATGGACATCTTCAGTTCCTCACTAGTGTTTGAAAAGGTGCCAGTTGCTAAAGGCAAAGATAAATCTGTTATTCAGTGTATGGAGTGCTTCTGTGACAACTTCTACGTTGGAGGTAAAGATGGAGTCCTCCAGCATTTCACTACGAGCTCGAAGACTGGGATCGGAGAACGTCAGACACTACGAGAGATAACGAAAAGACAGATGGGCCGAGGTGGAGAAATCCGCCAGCTGAAGGCAGTCCCAGTCCTGAACCACCTTCTTGTGCTTTGGGACAACTCCATCACGGCGTTAAACATGTTTTCCCTGGAGCCCATAGCAGCCCTGAAGAAGATCCACAACGTTTCTTTGTTTCGCCTCGGCGAACccgcagctcacacacagcaggtTTTCGTAGAGCTCTTCGTCGCCTCCACAAAACGGAGAGCAGTGAGCATATACAAGGTGTGTGTGGACAGATGGGAGTGTGTAGGGAACATGGCTCTGGCTCAGGATCCTGTGGCTTTGGCTGTGCATGAGACCTGCCTGTGCGTGGCTACAAGTGACAGATACATTCTCCATGATTACCAGACTCAGAGCGCTCTCGAGCTCTTCACACATAACCTGGGAAAGCAAAATGTTCTCGCAAAGGAAAGTGTGAAAGGAGAGTTTCTTCTAAATGGCCCAGGGAACTTGGggaTGTTTGTGATGAATAGTGGTATATCCCAGCGTCCTCCTGTGCCATGGCCTGATGGAGTGTTGGATGCAGTAGTGCACTTCCCCTATGTGTTGGTGCTGCAGAATAAAGCTCTCCACATCTACAGCATGTTGGACCAGCAGCTAAAACAGACCGTTCTCTTAAATAGCGGCAAATCACTCCTCTCAACCACAGACAGCGTGTTTGTAGTCGCCGAGAGGGAGATTCACCGGCTGTCACAGAGTCCACTGGAGGCTCAAATCCGGAAGCTGCTCGGATGTGAGCGAGTGAACGAAGCGCTCACACTGCTGGATGGAGTTCAGTCTCTTCTGCCCGAAGACTCTtataagCATCTGCGTAGGTGTATTGTTTGTACCTCCGGATGGATTCATTTCTACAGAGAAGCTTTTCTCGATGCCAAAGAACTTTTCATTAAAGGTGACTTGGACCCAAGAGAACTCATTAGCCTTTACCCAGGCATGACTCTCATCAGTGAAGACTTTAAATCTCAGCCTCCTACCGTGAGCAATGCCAAAGACTTGAGGAAGCTAAATAATGAAGCCCAGCCAGAGTTTCATAAGTATCTGAGCTTCCTCTGCCTTTATTTAAGAGAGATCCGCAGGACTGATCTGGGCCAAATCTTCCTTCAGGACATCGATACTACCCTGCTTAAAGTGTACTTACGGCTTGGGTATTATGATAACCTGAACCAACTTGTGTCTTCTCGTAATGATTGTGTGCTGGATGTATGCGTGCCAGATCTGGAGCAGTATAAGAGatTTTTCACAATCGGACTGCTCTATCAAAGCCATGGTCAACATTTCAATGCAATTCAGACCTGGGTGTGGATGGTGGATGAGAGTGTGGACTCCTCCGAGCCAAATGTTCTGCTGCACATTGTAAAAACTCTCTCTCGGTTGAAAGAGAAATCTATCATCATGAAGTTTATAGACTGGGCTCTTCAAAAAGACCAAAAGGTTGGCGTATTAATCTTTACTCAGAGAGATCCAGGAGACCAAAACACATTTGAACCACAAGAAGTGCTTTCCATTTTAACAAACTACCCAGTTGCTTTAGTTTCCTATTTGGAATTTTTGGTCAATGAACAGCAAAGTCAGATGGAGAAACACCACACCCTGCTGGCCAACACATACGCCACTCAGATCCTCCACACTGACCGAGAGATGCAGAATAATGATACACACATGGAGGAAATGAGGCAAAAACTGCAGCACTTTCTGTGGCAATCCTCCATCTATGATGCTGATGCTGTATATGCCAAAATACAGTCATCCGCTCTCCATGTTGAGAAAGCCATCCTGCTGGGGAGAGTCGGGGAACACAGAAAGGCCCTGCGGCTTCTCGTCGATGAAGAAAGAGATGAAAAAGCTGCAGAAGTCTACTGCTGGAGGACCTCTGCTGGACGAGACAGGGAATTCACGCAGCAGCTCTTCAGCTGGCTGCTCCAGTCTTACCTCGAGTTCAGGCCTCACGTGTCTGCGGCGGTGGATCTCCTGAACCAAAACGCCGTGGCTTTTAATCTGCTCAGGGTGCTGGAAGTGCTTCCTGGCTCCTGGTCCCTGCAGCTGGTGATGCGTTTCCTGTGCGAGTCACTGAGAGCGATGACGCACGACAGGAGGATGAGAGGCCTGGAGAAGAGCCTGGCCAGGATGGACAACCTCAGACAGAGACACGCCTGGATGGAAGCAACACAAGGAATGGTCAGAATGGACAGAAGCCAGGTGTGTCATTCTTGTCAGAGGCAGTTCATTGGGCCTGAATTTCTGTGCAGGTCTACGGGGGagcttcttcacacacactgctacagcACAAACAACAGCCAATAAACACTTTCAATTGTGTCAATTTTTATCCTTTACTAAATGTATACTGCAAATTTAGCAAAGTTCACCACATGCATATTAATGTGTACTTGGAAAAATAGTACTGTTCTTTTAAGGCtaacaaaaaagcatttcataAGCAATGCATAAATCAGTTATGCTATACTGGAGGATTATGTCAAAGCAAGtatactgtatttctttgtctttataTGGAAGAGAGACGAAGTCCAGCAgctagcattgctgcctcacagctccaaaatccttggtttgatcctgacctGAGGTTTGCTCCaggctttctgtttttctcctcccacctccccaaaaacatgctgataggtaaactggctatgctaaattacctctaggtgtgaatgagtgtgtgaatttgtttgTCCATAGACTGGCACTCCATTCACACCCagggttcctgggataggctccggatctacCGAGAacctggccaggataaagcggttactgaagatgaatgcgtgaatgaatgaatgacttttGTATCagaagttattattttgtctgtaCTAACAGCTCATTCCTGAAGTATTAAGAAGCCTTCTACCTGTCATCTGACCATTTGAGAGCTATAGTTACTGAATTTACTTCTTATTAGAGCATGAAATTTAATTATCTTCAACTGAATTGCTGGTGGTCCGTTCACTTTCAATACTACAACGAAGAATCATTCCAGTactcttttaattatttatgaagcCCATATACAGGCCAAATGAATCATTACAATGCATTTAACATAGTAAAACACTATTATGAAGCTTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926867.2 True 3537 mRNA 0.45 11 25620016 25633883

Neighbor

gene id symbol gene type direction distance location
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding downstream 27273 25587488 ~ 25592743 (-)
fyna fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790 coding downstream 45895 25557409 ~ 25574121 (-)
LOC113534087 LOC108270379 coding downstream 64453 25534732 ~ 25555563 (-)
LOC117598273 NA coding downstream 85356 25533476 ~ 25534660 (-)
LOC117598272 LOC108270379 coding downstream 86540 25521364 ~ 25533476 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding upstream 844 25634727 ~ 25640221 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding upstream 17925 25651808 ~ 25660655 (-)
manea LOC108270006 coding upstream 30455 25664338 ~ 25669975 (-)
cx52.7 LOC108269563 coding upstream 45431 25679314 ~ 25680741 (-)
LOC113534079 LOC108269777 coding upstream 678926 26312809 ~ 26321625 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 110396 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 149942 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 230145 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 328078 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 330514 25287152 ~ 25289502 (-)
G171755 NA non-coding upstream 139621 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 343913 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 424362 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 961398 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1138249 26772132 ~ 26773050 (-)
G171734 NA other downstream 37489 25578939 ~ 25582527 (-)
G171569 NA other downstream 360654 25258839 ~ 25259362 (-)
G171256 NA other downstream 693792 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1075937 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2440505 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1931375 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2037740 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2265599 27899482 ~ 27910890 (-)
G172919 NA other upstream 2278354 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 3164266 28798149 ~ 28860011 (-)

Expression


Co-expression Network