il17a/f1 (LOC108269793)


Basic Information

Item Value
gene id il17a/f1
gene name LOC108269793
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28895892 ~ 28898603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926871.2
GGTACCAGACAGAACCACGAGCAGCGGAGAGAAGCCGAACAACAGGGCGGAAAACATGGCTTTAAAAATCACACTCTTAACGCTGCCGTGTgtggcgatgatgatgatgatgatgatgatggttgcTCAGGCTGCTCCTCAGAAGCTTCAGGGAAAAGCTGGAGCTCATCACAAACCCGCAAACTCTCATGGAGAAGATTCTCCGAAATACTACATCATCAGTAACCTGGAACAGGAAATCAAACCGGCGTCAATGTCCATCCGGCCAATCCACAACGACTCCATCTCACCCTGGGAAtacatCTCCACGACCGATTCGAATCGGATTCCGTCTCAGCTGCACGAGGCTCGCTGTCTCCTGACCGGCTGCTTAAACTGGAACGGCGTCGAGACCCTGGAGTTGGAGTCCAGACGGATTTTCCGGCAGATTCCGGTCCTGCAGAGAGTCCGCGGAGACGACAAGAACTACTTCTTCAGACTGGAATATAAAACCATCTCGGTGGGCTGCACCTGCGTCCGGCCGTACGTCGAGCAGATCTGACGCAGAACACGCCGCAGTTCCCCTGGATTTTTACTATTgactctattattattattatttatt

Function

NR:

description
PREDICTED: interleukin-17F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926871.2 True 604 mRNA 0.51 3 28895892 28898603

Neighbor

gene id symbol gene type direction distance location
LOC113533718 insm2 coding upstream 99117 28792839 ~ 28796775 (+)
psma6a psma6,psma6a,LOC107729267,LOC107586679,LOC103457804,LOC107725920 coding upstream 131877 28759865 ~ 28764015 (+)
prorp kiaa0391 coding upstream 136498 28742052 ~ 28759394 (+)
fam177a1 fam177a1 coding upstream 160002 28730429 ~ 28735890 (+)
ctage5 ctage5 coding upstream 179205 28694978 ~ 28716687 (+)
emilin1b emilin1,LOC107693157,LOC107729260 coding downstream 69528 28968131 ~ 28983869 (+)
ankef1b LOC108269963 coding downstream 98421 28997024 ~ 29006766 (+)
snap25b snap25b,LOC103032718,LOC108415625,LOC108270282,LOC107693159,LOC107589629,LOC107586606 coding downstream 109917 29008520 ~ 29026238 (+)
ahctf1 ahctf1,LOC106512612 coding downstream 130067 29028670 ~ 29051439 (+)
ttc7b ttc7b,LOC106601235 coding downstream 176999 29075602 ~ 29087181 (+)
G173156 NA non-coding upstream 31794 28832346 ~ 28864098 (+)
G173154 ralgapa1,LOC108414275,LOC107729238,LOC107589631,LOC107586611 non-coding upstream 70527 28820500 ~ 28825365 (+)
G173143 NA non-coding upstream 88743 28798167 ~ 28807149 (+)
G173140 nfkbia non-coding upstream 123827 28770025 ~ 28772065 (+)
G173106 NA non-coding upstream 364201 28531459 ~ 28531691 (+)
G173198 NA non-coding downstream 15489 28914092 ~ 28973429 (+)
G173200 NA non-coding downstream 22400 28921003 ~ 28921399 (+)
G173201 NA non-coding downstream 22866 28921469 ~ 28923086 (+)
G173208 NA non-coding downstream 90516 28989119 ~ 28989706 (+)
G173209 NA non-coding downstream 92194 28990797 ~ 28993470 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other upstream 824811 28028000 ~ 28071081 (+)
trnak-uuu_7 NA other upstream 1170613 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 1428326 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 3464963 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 3577615 25258811 ~ 25318277 (+)
kif28 kif28p,LOC108270380 other downstream 155630 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 171117 29069720 ~ 29073089 (+)
nrde2 NA other downstream 194861 29093464 ~ 29138776 (+)

Expression


Co-expression Network