tmem30b (LOC108269804)


Basic Information

Item Value
gene id tmem30b
gene name LOC108269804
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24454401 ~ 24462936 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926874.2
AAacgaagccccgcccacaggaagttagttcctgtttcaGGTAGCACTACAGGTAGTGAGTGAGGTGTTGGGCGTTAGCTTATCGTCGAcggcttttttaaaaaacaaagaacaagagTAAGTTTAAACTCGGTTTCTTTGGATAATTTGATTCAGTTCCTCGCCAGCTTTAAGTGGACAGACAGTGTCAGGATGAAGGCAGAGGGGTCGATGGCCAATAGGCCAGATAACACCGCGTTCACACAGCAGCGACTTCCTGCCTGGCAGCCCATTCTTTCCGCTGGCATCGTCATCCCTGGCTTCACTCTCATCGGCCTGGCCTTTATCGGCATCGGAGTGGCTCTCTTTGTCACCTCGCAGAACATTAAAGTACTGGAGAGAGATTACACAGGCAATTCGGACGATTCTTCCTGTACCCAGTGCATCGACCCTGCTAAAATAAACTGCGTATGTGAGGTCAAATTCTCCTTCAGTGAGCTTTTTGAGgGTCCTGTCTTCTTCTACTATGGCCTGTCTAATTATTATCAGAACTACAGATCATACGGCGTGTCTGTAGACCCCAACCAACTGGTGGGAGACACAAAGTACTTTCTGTCTCCAGACAGCACCTGCTCTCCCTATCAGAATGATTCCAGCGGGACGCCTGTTGTTCCCTGTGGATCCATAGCAAACAGCATGTTCAATGACTCCTTTAAGCTATACCAGACTGTCAATGGGCAGAAGACGCTGGTTCCATTTGACAGGAAAGGAATTGCATGGTGGACGGATTACAACATCAAATACAGGAATCCTACTCCTGTCAACGGCTCCTTCGCTAAGGCTTTCACAGgtaCAACAAAGCCCGTAAACTGGCCAAAGCCAGTGTACGAGCTGGACCCAAATGACCAGGCCAATAACGGCTTCCTGAACCAGGACTTTCTGGTGTGGATGAGGCGTGCAGCACTTCCTAACTTCAGGAAGTTGTACGGGCGAATCACAGGAGGAGCTTATGCAGATGGCTTGCCTGCTGGAAACTATACCTTAGAGATCAACTACAACTACCCTGTACGGAGCTTTGACGGCAAAAAGACAGTGGTGTTCACCAATGTTTCCTGGATGGGAGGAAAGAATCAGTTCCTGGGCATTGCCTACCTTGTGATAGGTTCTCTCTGCATTGTCATGGCAGTAGTCATGCTCATCGTTTACGCAAAATACAAGTTTCCAGACGACGATAGTGCATAATGCGATTGTACTTACGCTTGTAGTATGAAAATTGTGAATTTGTCAcctttagttttatttttttagtccTCAGAATGTCCCAGTTAGATCACAGGTTTTGCTATAACTGTTGTAACATTTTTCAGGTTTGAATCTGAAACGGAGTAAGAAGCTGGACCAAGAGCATACAGCATATACTTTACAGTACTCATGATAAATAAGATTGATCAGTTGAATTAAAGGTGaagaaatatttgttttatccAGGATttaaggaaaaatccacccttgCATAAtagtctttataattaacatgtcaACGACGTACAAGATTCCgagttggcttttttttt

Function

NR:

description
cell cycle control protein 50B-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926874.2 True 1553 mRNA 0.45 8 24454401 24462936

Neighbor

gene id symbol gene type direction distance location
smndc1 smndc1,LOC107671123,LOC107668620,LOC107552887 coding downstream 4439 24443797 ~ 24449962 (-)
samd8 LOC108269803 coding downstream 14147 24431395 ~ 24440254 (-)
dnal1 dnal1 coding downstream 45619 24403823 ~ 24408782 (-)
tedc1 c9h14orf80 coding downstream 52842 24391053 ~ 24401559 (-)
tmem121aa tmem121a,tmem121,LOC108270236,LOC107674105,LOC107592808,LOC107697696,LOC107594772 coding downstream 74295 24364002 ~ 24380106 (-)
cep295 LOC108269817 coding upstream 511103 24974039 ~ 24991828 (-)
si:ch211-266o15.1 LOC108269816 coding upstream 546847 25009783 ~ 25046786 (-)
nid2a nid2,wu:fb77a09 coding upstream 593428 25056364 ~ 25106759 (-)
txndc16 txndc16 coding upstream 719480 25182416 ~ 25206473 (-)
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding upstream 777150 25240086 ~ 25252303 (-)
G171056 NA non-coding downstream 170000 24284009 ~ 24284401 (-)
G171028 NA non-coding downstream 206386 24247685 ~ 24248015 (-)
G170936 NA non-coding downstream 419503 24034508 ~ 24034898 (-)
G170887 NA non-coding downstream 455690 23995566 ~ 23998711 (-)
G170866 NA non-coding downstream 535378 23918425 ~ 23919023 (-)
G171175 kdm1a non-coding upstream 5287 24468223 ~ 24469486 (-)
G171184 NA non-coding upstream 65391 24528327 ~ 24528696 (-)
G171232 NA non-coding upstream 135339 24598275 ~ 24655253 (-)
G171258 NA non-coding upstream 303974 24766910 ~ 24801063 (-)
G171257 NA non-coding upstream 320081 24783017 ~ 24915150 (-)
greb1 greb1 other downstream 1274890 23148743 ~ 23179511 (-)
G170435 NA other downstream 1590634 22855494 ~ 22863767 (-)
G170023 NA other downstream 2338525 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 3334776 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 3636962 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 27302 24490238 ~ 24544079 (-)
G171256 NA other upstream 318346 24781282 ~ 24926224 (-)
G171569 NA other upstream 795903 25258839 ~ 25259362 (-)
G171734 NA other upstream 1116003 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3102322 27565258 ~ 27652301 (-)

Expression


Co-expression Network