txndc16 (txndc16)


Basic Information

Item Value
gene id txndc16
gene name txndc16
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25182416 ~ 25206473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926883.2
GTGTTTGGGATACAGCCTCTGTTTCAGGAAGTAACAGTGGATCCCATATTACAGGCTGGAGGATTTTATACTTTTTAGCTATATTTATCTACAGTAAAAGGCTgatgtgaaatattttttgcaatgcttataattttaaaaatgttttccaaGAAGAGGAAGATTTTGGATGAATTCGGAAACTAGTCACGTTTGAATGACGTGTAAAATAGTGATGTAGGAATGCACCACACTGGGATCATGAagactttgtgtgttttgtgtgtgtttgtgctgtgttttgtgTCAGAGCAATGCACTTGTGGAAATCCTGCAAAGCTGCTGCAGCTCACTGCTCAGGGCTTTAAAGAGCACGTGCAGTCCGGAAAAACAGCTCTCATTTACTTTGGCAAATATGCTGATTCAGCCATTCAGACGTTTATAGAGCAGTTAGAGACGTCCGCTGTGGCGTTGGAGGACTATGGCATATTGGTGGCGATGGTGAACTGCTCCAAAGAAAATGTCGCAGAATACTGCACAGAGGAAGAAGTGATGCGGAAAGCATATTTATTCAGAGGCGCAGATGTCTTGAGAAGTTTCGAGATTGACACCATTTTTGACGTCAACGCCATCGTGTCCCACATGCTATTCACGGTGCTCTTCAACGAGGTTCGATACATTCACACTCCAGCTGAGTTGGTCGGCGTTGAAAGAGTGGCGAGGGGAAAGACGGACATTGTGATGGGTCACATACCTGCACTCGGGCTTCCAGAGCACCGGGCTTTAATGGAGGCGGCGTTTGTTTACGGAGGAAAGTACCAGTTTGTGCAGACCACCGGCGCTCCTCTTCTCAAACACATGGGGATTGCTGATGTGTCCTCTGTCCAGGCGCGTCTCTGGTTCCTCCACTGCAACAGTGTGTCTCACGCGTCTGAACCGTGTCCTCACACACTTATGAAAAAGCCACTGAGCACCATCAACATACACACCTTCCTTCAGCTGATGGAGGCACCAGTCCTGATGGAGGCAGATGTTGATCCTGATGACGTGGATGTGATCTATAATCACTTGAACGTGCCTGTGCTGTTCCTGTTCGCTCAGACTGAGACACTGCACATGGATCGCAGCACGGCTGAGGCTTTGGCCTGGAGGCTGCGAGGAGAGATTGGCCTCGTCCTAATCCACAGGGACAGTCCCAGGGTGAAAACTCCGGTCAGATATAATGCTGCATATCGACTCCCACACAAGgaagtgaagtaTTTTACTTTGAAGAATGTTGAAGAAGTCGTTAACCTTATTCGGGGGCAACTATTTCAAgaggagaaggaagaagaagaggaggatgacGAGGATGAGGATCACTGGGCTTCTACAGATGTTTTGGATGATGAGGTGGCGGAGTCGGTGTACAGAGACCGCGGTGTAATGCTGGACATGGAGTCTGTCTCAGAACTCACAGCTGACACTTTCAGCACTGCAGTAGCTCAGAGCGACCTCACGGTGGTGCTGTTCTACTTTAAATGGGACGCTGTGTCCATGGCTTTTCTGCAGTCGTACGTCGAGGTTGCTGATGCACTTGAAGGTGTGAGTGATATCACACTGGCCTCCATAGACTGTGGCGagtggacgtgtgtgtgtcgTGATCAGAATGTCTCCTCTTTCCCTTCCGTTCTGCTGTTCCGTCTGGGTGAGGACACTCAGTCCTACAGAGGCATGATGGGAACTGAGAGCCTGTATAGATTCATCCTGCTGAGTCATCTCTCCATCCcgctctctctgtcctcctcgGATGAAGTCCTGTCCTTCCTGGAAGGAGATCTGTATAACAGACACTCTTCTTTCTCGCCCATCCGAGTGCTCGGTCTTTTCACACCTGAAGATCCGGATGTGGCCATTTTTGAGGAAGCAGCGAAATATCTAAGGGGAGAAATGATTCTGGGGCTGTTTGAGCACATGGAGGCAGAGAGATGggctCAGGAGCATGCTGTGATGCTGCCTGCTCTCCTGGTGTCTCATGGCCCTGGAGTTCAGAGAAAAGCTCATTCCCTTCTTTTGTCCACGTTACAGGAGATGATCTCGCACATCAGGAGAGTGGCACTTGATACATTTCCTGAACTGACAGTCGAGAACCTGCCATGGTATTTGGAGCTCAGGAAGCCTTTGCTGATAATGTTTGTTGGGGGAGAAGAAAGTCCAGAGACTTTGCAATCTCTTGAGGAGATGAAGAAGGCTGAGAGAACGGGACAGCTGGACTCGTCACTGCCATGCTGGATCCATCTgggtcGCACTCCTGCTGGACGGGCCGTCTTAGAGACCTATCTTAGCTATGTTCCTCCACTCCCTGCTTTGGTGCTCTCACAGCTGAGCTCAGGTGGAGAGGTGTATCACTTCCCCACAGAGCGCCCTCTGCtgtctgaaaacatcattcagtggCTGCAGTGGATAGAAAACAACCAGGAGCAGGCTGCAGGTGTGATTCCAGATAAAGCGTGGCGTCCCCCTGTGCCTTTTTATGACTTTCTGGCCGTCATGGACGAAGAGGCACCGGGTTACGCAGCTCAGCAGCGCCCTAAAGCAAAGCATGTGGGCAAAAAGGAGGAGGACGATAAGAAGAAACGAGGTGCTGGAAGAGAAACAGCTTTCAAACCTCAAAGAACTCCTCGTCATACCGAACTGTAGACTTTTATCCTTTTATCTAGGTGACTCATCATGACAAGATGACAAAATGagtcatgtaaatatttatatcaatatGATTGAGGTGTATGACTCCACACGGCTGCTATTTTTATTATgcttttgtattatttaaatatttatttctttttattaatgcaGCATTTTAAAGAATAACTTGTTATTGCTCATTCCTTTCTCGTCTGATTTGTACCAGGAACTCAATAAAATGCTCAGATACAGTACTGATGAGTTCCTGTAATTAGGCTTGTTTATGATTGATGAGAAGAGCGGTTTCACTGATTGAGTCATGACTGCTTTTTTAATCATCCGCTCTACGTGCCGTTCTGCTTCTGCCATTGAAAGTAGCACAACAAACCTGTGTTTCATTTCCTATGCTGTAAAAGTTGACcgcggggggaaaaaaacccagcattatttaaaagagcagagaaaaaggaaaagcttatatatatatatatatatatatatatatatatatatatatatatatatatatcttgcaAATGTGAGCTCTTAGGTCTTATATAATATTGACATGCTTTCTTCCAATACAGATCCAAATGTTAGACCATGTTAGAAAagaacaaggttttt
>XM_026926884.2
GTGTTTGGGATACAGCCTCTGTTTCAGGAAGTAACAGTGGATCCCATATTACAGGCTGGAGGATTTTATACTTTTTAGCTATATTTATCTACAGTAAAAGGCTgatgtgaaatattttttgcaatgcttataattttaaaaatgttttccaaGAAGAGGAAGATTTTGGATGAATTCGGAAACTAGTCACGTTTGAATGACGTGTAAAATAGTGATGTAGGAATGCACCACACTGGGATCATGAagactttgtgtgttttgtgtgtgtttgtgctgtgttttgtgTCAGAGCAATGCACTTGTGGAAATCCTGCAAAGCTGCTGCAGCTCACTGCTCAGGGCTTTAAAGAGCACGTGCAGTCCGGAAAAACAGCTCTCATTTACTTTGGCAAATATGCTGATTCAGCCATTCAGACGTTTATAGAGCAGTTAGAGACGTCCGCTGTGGCGTTGGAGGACTATGGCATATTGGTGGCGATGGTGAACTGCTCCAAAGAAAATGTCGCAGAATACTGCACAGAGGAAGAAGTGATGCGGAAAGCATATTTATTCAGAGGCGCAGATGTCTTGAGAAGTTTCGAGATTGACACCATTTTTGACGTCAACGCCATCGTGTCCCACATGCTATTCACGGTGCTCTTCAACGAGGTTCGATACATTCACACTCCAGCTGAGTTGGTCGGCGTTGAAAGAGTGGCGAGGGGAAAGACGGACATTGTGATGGGTCACATACCTGCACTCGGGCTTCCAGAGCACCGGGCTTTAATGGAGGCGGCGTTTGTTTACGGAGGAAAGTACCAGTTTGTGCAGACCACCGGCGCTCCTCTTCTCAAACACATGGGGATTGCTGATGTGTCCTCTGTCCAGGCGCGTCTCTGGTTCCTCCACTGCAACAGTGTGTCTCACGCGTCTGAACCGTGTCCTCACACACTTATGAAAAAGCCACTGAGCACCATCAACATACACACCTTCCTTCAGCTGATGGAGGCACCAGTCCTGATGGAGGCAGATGTTGATCCTGATGACGTGGATGTGATCTATAATCACTTGAACGTGCCTGTGCTGTTCCTGTTCGCTCAGACTGAGACACTGCACATGGATCGCAGCACGGCTGAGGCTTTGGCCTGGAGGCTGCGAGGAGAGATTGGCCTCGTCCTAATCCACAGGGACAGTCCCAGGGTGAAAACTCCGGTCAGATATAATGCTGCATATCGACTCCCACACAAGgaagtgaagtaTTTTACTTTGAAGAATGTTGAAGAAGTCGTTAACCTTATTCGGGGGCAACTATTTCAAgaggagaaggaagaagaagaggaggatgacGAGGATGAGGATCACTGGGCTTCTACAGATGTTTTGGATGATGAGGTGGCGGAGTCGGTGTACAGAGACCGCGGTGTAATGCTGGACATGGAGTCTGTCTCAGAACTCACAGCTGACACTTTCAGCACTGCAGTAGCTCAGAGCGACCTCACGGTGGTGCTGTTCTACTTTAAATGGGACGCTGTGTCCATGGCTTTTCTGCAGTCGTACGTCGAGGTTGCTGATGCACTTGAAGGTGTGAGTGATATCACACTGGCCTCCATAGACTGTGGCGagtggacgtgtgtgtgtcgTGATCAGAATGTCTCCTCTTTCCCTTCCGTTCTGCTGTTCCGTCTGGGTGAGGACACTCAGTCCTACAGAGGCATGATGGGAACTGAGAGCCTGTATAGATTCATCCTGCTGAGTCATCTCTCCATCCcgctctctctgtcctcctcgGATGAAGTCCTGTCCTTCCTGGAAGGAGATCTGTATAACAGACACTCTTCTTTCTCGCCCATCCGAGTGCTCGGTCTTTTCACACCTGAAGATCCGGATGTGGCCATTTTTGAGGAAGCAGCGAAATATCTAAGGGGAGAAATGATTCTGGGGCTGTTTGAGCACATGGAGGCAGAGAGATGggctCAGGAGCATGCTGTGATGCTGCCTGCTCTCCTGGTGTCTCATGGCCCTGGAGTTCAGAGAAAAGCTCATTCCCTTCTTTTGTCCACGTTACAGGAGATGATCTCGCACATCAGGAGAGTGGCACTTGATACATTTCCTGAACTGACAGTCGAGAACCTGCCATGGTATTTGGAGCTCAGGAAGCCTTTGCTGATAATGTTTGTTGGGGGAGAAGAAAGTCCAGAGACTTTGCAATCTCTTGAGGAGATGAAGAAGGCTGAGAGAACGGGACAGCTGGACTCGTCACTGCCATGCTGGATCCATCTgggtcGCACTCCTGCTGGACGGGCCGTCTTAGAGACCTATCTTAGCTATGTTCCTCCACTCCCTGCTTTGGTGCTCTCACAGCTGAGCTCAGGTGGAGAGGTGTATCACTTCCCCACAGAGCGCCCTCTGCtgtctgaaaacatcattcagtggCTGCAGTGGATAGAAAACAACCAGGAGCAGGCTGCAGAGCCAGAATCCAATATAAGCACAGAGCTCTTAAAGGAGCTGGCAATGACGCTATTGCTGCAAGACCACAGAGTGGCCAGAAATGAGTGCAAGataagctacacacacacacacacacacacacaaatgcatacaGTCCAGTTTATAGCAGAGATCCATGACATTTCAAAATGACCTTAAAGCCAGGTAAACCCTTAATAGACCAGCTGTCTTTGATTgaccttctttctttttgtttaacttGAGCACTGGACGTTCCTTTCACTCAGACCTGGTGCCATCTGTCACACATGTTCCAGAAGGTTAAGCCATAATCCCTCTTGCTCTTGTTTGATGAGCATGAGCATATCAGAAACAGCTTGCAGCAATGAAACTCATGGAAACTTGTTTTAATTTCCCATCTCCTTAAATCTAGTGGAATTTAAGTAACAGCCCTTTCTGGTCTATTGGCTCTCATGCTCTCCTTGCATATTTACGTGTTTCATAGGCAATTTGGTTGCAGATATTCGATTTGTATCTGTCTGAACATTTTCCAGTAGTGCCACGGAGCACGTTGACCTTGCTGGCATAATCTTACTCCTGCCGGCTTGTGGTTAGTTCCCAGCAATGAGATTTTTGGCTTCATGAGCTTGGCAGGAATTGAGATGAGACCAGGTTGCTTTTAGGTAATTTCTTTACCAGGTTGACTGGAACTCTGCTCAAGACGTGTTTTCTGAACAATGCAGTCGGAAAGACAGCATTAACCTTTCACTTGGAGTGTATTAAAGGAGCAGAACTGGCCAAAAATTTCTCCAAACATAGGCAGTGAGTCTGGTGTGTTTGGTGTGCAAAGTCTGCttatttagttttgcactggagcttcAAGACTAATGAAGCTAACAAGTAAGGAAAGCTCCCAGCTTAGCATGCTTCAAAATGTATATCCATCTCATTATAAACAGCTTTGTCTAGACTTACATTATTTCTGACAATGTATGACACGTGGTTATGTatgaaaatggacaaaaggaTGCTGCAGAATGGG

Function

symbol description
txndc16 Orthologous to human TXNDC16 (thioredoxin domain containing 16).

NR:

description
thioredoxin domain-containing protein 16 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926883.2 False 3273 mRNA 0.46 19 25182416 25206473
XM_026926884.2 True 3472 mRNA 0.47 19 25184047 25206473

Neighbor

gene id symbol gene type direction distance location
nid2a nid2,wu:fb77a09 coding downstream 75657 25056364 ~ 25106759 (-)
si:ch211-266o15.1 LOC108269816 coding downstream 135630 25009783 ~ 25046786 (-)
cep295 LOC108269817 coding downstream 190588 24974039 ~ 24991828 (-)
tmem30b LOC108269804 coding downstream 719480 24454401 ~ 24462936 (-)
smndc1 smndc1,LOC107671123,LOC107668620,LOC107552887 coding downstream 732454 24443797 ~ 24449962 (-)
ero1a ero1a,LOC107679999,LOC107693134,LOC107564954,LOC107583613 coding upstream 33613 25240086 ~ 25252303 (-)
gch1 gch1,LOC107583460,LOC107564951,LOC107693131,LOC107723641,LOC107751761,LOC107680005 coding upstream 114037 25320510 ~ 25335259 (-)
wdhd1 wdhd1,LOC107583614 coding upstream 130073 25336546 ~ 25361861 (-)
socs4 socs4,LOC108270091,LOC107564995 coding upstream 163032 25369505 ~ 25371805 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding upstream 183458 25389931 ~ 25396747 (-)
G171381 NA non-coding downstream 173027 25008099 ~ 25009389 (-)
G171257 NA non-coding downstream 267266 24783017 ~ 24915150 (-)
G171260 NA non-coding downstream 360195 24813178 ~ 24822221 (-)
G171258 NA non-coding downstream 381353 24766910 ~ 24801063 (-)
G171232 NA non-coding downstream 527163 24598275 ~ 24655253 (-)
G171542 NA non-coding upstream 55135 25261608 ~ 25262527 (-)
G171545 NA non-coding upstream 57895 25264368 ~ 25265970 (-)
G171543 NA non-coding upstream 61429 25267902 ~ 25271762 (-)
G171572 NA non-coding upstream 79569 25286042 ~ 25286781 (-)
G171570 NA non-coding upstream 80679 25287152 ~ 25289502 (-)
G171256 NA other downstream 256192 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 638337 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2002905 23148743 ~ 23179511 (-)
G170435 NA other downstream 2318649 22855494 ~ 22863767 (-)
G170023 NA other downstream 3066540 22115565 ~ 22115876 (-)
G171569 NA other upstream 52366 25258839 ~ 25259362 (-)
G171734 NA other upstream 372466 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2358785 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2465150 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2693009 27899482 ~ 27910890 (-)

Expression


Co-expression Network