galcb (LOC108269778,LOC108444013,LOC107372531)


Basic Information

Item Value
gene id galcb
gene name LOC108269778,LOC108444013,LOC107372531
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26323399 ~ 26334056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926895.2
GTTTGTGTCAACCGGGCCCATTTGCGGAAGTATGATCATGTGATCAGGTGGTTTGTTTGTGGATGAGATAGAATGAGCAGGAAAACAGGCATTcgtgtgtttttattctttttgttatGTGTCCTTGTTTGTTCAGCTGATCACAACTACTTTATAGATGATAGTGGTGGATTTGGACGGACATTTGATGGCATCGGGGGTTTGAGTGGTGGTGGAGCAACATCTCGGCTACTTGTTAACTATGCCGAACCATACAGGAGTCAAATTCTGGATTACCTTTTCAAGcCCAACTTTGGAGCTTCTTTACAAATCCTGAAAGTTGAAATTGGAGGTGATGCACAGACAACAGATGGTACGGAGCCGTCTCACATGCACTATCCGAATGATGAGAATTATTTCAGGGGATATGAGTGGTGGCTGATGAGAGAGGCGAAGAAGAGGAATCCTAACATCACGCTGATAGGCTTGCCGTGGGCGTTTCCTGGATGGGTGGGCCATGGGGAAGACTGGCCCTATCACTTTCCTGATATTACTGCTTATTATGTCGTGTCCTGGATTATCGGAGCGAAGCAATACCATGACCTGGACATTGATTATGTTGGgATATGGAATGAAAGGAGTTTTAACAGCAAATATATAAAGATCCTGCGCTacactctggataagagcggTTTGGAGAGAGTCAAAATCATCGCCGGTGACAACTTGTGGGAGCCAATAACTGTTTATGTCCTTCTAGATTCTGAACTCAGGAGTGCTGTGGATGTGCTTGgCGCTCACTATCCTGGAACAGTCACGGTACCCGAAGCCTTGCTCCTGAAGAAGCAGCTGTGGTCTTCTGAAGACTACAGCACCTTCAACGATGATGTGGGAGGAGGCTGCTGGGCGCGAATCCTCAACCGGAACTACGTTAACGGCAGGATGACTGCCACTATTTCCTGGAACCTGGTGGCCAGTTACTATCAGGATCTTCCATTTGGGAGAGACGGGCTGATGACTGCTCAAGAGCCATGGAGTGGAAATTATGTTGTGGAATCGCCCATTTGGATAACAGCCCACACCACACAGTTTACTCAGCCTGGGTGGAAATATCTGCAGACTGTAGGGCACCTGTCGTACGGTGGGACTTACGTAGCTTTGACGGATCAGAATGGCAACCTGACTATAGTAATAGAGACCATGacTCATGATCACTCTGTGTGCATACGGCCTCCTCTGCCTCACTATGACGTCACACCGCAGAAAGCCACCTTCTCATTAAAGGGATCGTTTGCCTCAGTTAGTGAACTGCAAGTGTGGCATTCGAAGTTTGATTTCGAGACGAAAAAGCCAATCTTCTTTCAAAAACTGGATCCTGTAAAGGTATCTAATGGGACCTTCAGCTTGGACCTAGATGTTGATGAAGTGTACACGGTAACCACCATCACCACAGGATATAAAGGGAGTTATCCAGAGCCTCCTCCCTCCGCTCCCTTCCCGAAAAAATATTCAGACGACTTCAATGTCAGACACCCGTACTTCTCCGAGGCGCCGCACTTTGCTGATCAGACCGGAGTGTTTGAATACTTCATGAACCTAACGGACACCGGCGCTCACGTTTACACGCTGCGTCAGGTGCTCACGCAGCGGCCAGTCACGTGGGCAGCGGATGCAGATCAAACCATCAGCGTCATCGGAGATTATACCTGGCAGAATATAAGCGTCTCCTGTGAAGTGTACATGGAGAGCAAGTACAcaggaggtgtgtttgtggcaGCGAGAGTGGATAAAGGAGGAGGATCCATCCGGAGCGCACGGGGAATCTTCTTCTGGGTGTTCGCTGATGGAACCTACAAAGTCACCAATGACCTCCGTGGAGAAAGTGTCCTGGCCGAGGGACTGTCCGGAACCCGAGCTCATGTGTGGTACACTCTGACTCTGACCGTCCAGGGTTATTTCGTTTCTGGAGAGCTGAACGGCTACGTGCTGTGGAAGGACGCAATCGTTTTGACACCGATACACGGATGGGCGGCTATCGGCACGAGTACATTCCAACTGGCTCAGTTTGATAACTTTGTTGTACAGGCAGAGTAACAACACGGCCTAGTCTTTATTTCCTGTCTAATAACTGGATATAATAATGGGAGGATTTTTGGGCTTTAAATACTGAGACTTTCTGACATTTCTTACAAggttgcttttaaaaaaaaatgcagtttggaATTGCACTGATGTGATTAACTCACTGGTGaaatactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagatgacatcTGTAAATTGCACTGAAGTACATGATGTCCATGGGACATTTTACAATGAATGCCTTAATTAGTATTAAAATCTCTTGAATGTGAATTTTACGTTCTTTGATTTGAGACTTTTTCAGTTTTggtaatgtttttgtttattacttttacGGTTATATGAATGAAAAGGATAACATGGGATCAGCAGCACAAGGCAGGGCTGTTTATTAAACTTTAGCTATCTGTCTTTATGCTAGCATAAGGAATAAGCAAAATCAATCACGTGgtttttttggtgaaaaatgTTTCTTTCCATCAACGAGTCCATTCACTGCATACTATGctgcaaaaagaaaaggaaaaaaattaaggaaCTGGCCAAAAAGggattaaaaatgtttcatttgcaaaaatatattgaCCTCAGAAATGTTATTGATTGAAGAAAACAACATGGATCATGAAAAACTATGAAATCCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01202 GALC; galactosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926895.2 True 2764 mRNA 0.45 17 26323399 26334056

Neighbor

gene id symbol gene type direction distance location
LOC113534080 NA coding upstream 10892 26307077 ~ 26312507 (+)
si:dkey-87k14.1 flrt2,LOC107583684,LOC107750877 coding upstream 105231 26213268 ~ 26218168 (+)
gsc gsc,LOC102791948,LOC101076325,LOC107578966 coding upstream 413093 25904043 ~ 25910306 (+)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 coding upstream 464976 25829865 ~ 25858423 (+)
clmn clmn,LOC107583621 coding upstream 495364 25794575 ~ 25828035 (+)
LOC113533735 amhr2 coding downstream 766 26334822 ~ 26348340 (+)
ak7b LOC108269780 coding downstream 15806 26349862 ~ 26360091 (+)
vrk1 vrk1 coding downstream 71334 26405390 ~ 26419207 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 569583 26903639 ~ 26914229 (+)
trnat-ugu_12 NA coding downstream 581302 26915358 ~ 26915430 (+)
G171684 NA non-coding upstream 544667 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 730650 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 800710 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 933894 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 934233 25388772 ~ 25389166 (+)
LOC117598331 NA non-coding downstream 291884 26625940 ~ 26686726 (+)
G172052 NA non-coding downstream 455467 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 469000 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 533061 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 633276 26967332 ~ 26967536 (+)
LOC113534148 NA other upstream 892470 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1005122 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1145502 25176374 ~ 25177897 (+)
G171329 NA other upstream 1315633 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1322780 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 822287 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 1391151 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1693944 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2527406 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2720177 29054233 ~ 29138878 (+)

Expression


Co-expression Network