c10h14orf28 (c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876)


Basic Information

Item Value
gene id c10h14orf28
gene name c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23768992 ~ 23777316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926912.2
GGCGTGTCCACTCGACACTTCACAGGATGTTGTGAAAACACAGATGCCATGTTTTGTGCTCAGTTGGGGTAAAGACTACGCCGGGGGCATTTGGTCATTTCAAGACATGAAAACCAGAGAACTATGGAGAGGGATGTGTGCTGTTTAAAAGACATAGAGGACGTGACGTCAGAGTCTGGTGTGCAGATTGAGAGgACCAAAACCTTGATCGAAGAGATCCGTGCTTTGATCAAGAACAATGAGGCGGAGTATTGCTCTTTCTGGAGGCCTGTGCTCCCATGGGGTGGCGTGTACACGATACGGGCAGGTCAGAAGGCCATCTCTTGCATACCCCTGTACGTTAAAATCAATCTGAAAAACACCTGCACCATCGATGGCTTCCTCATGCTTTTGTACGTCATCCTGCGGGATAATCAGACCTTCCGCCGGGAAGTGGGTTTGTTCTTGGGGAAGCGCTTTGTGGAGCACTTTCTCTATCTGATGGACTCCTACGATTACACCACAGTCAAGATTTTGTGGATCTGGGACAGGATGTCTAAGCGTCAGTACCGCTCCGAGATCCATCAAGCCGCTCTGGAGATCGACCTTTTCGGCAACGAGCATGAGAACTTTACCAAAAATCTGGAGAACCTGATGTCTACCATTCAGGAGAGCTATTGCACCAACTGTTGCTGTCCGTCTCGTTTCCAGGAGCTCCTTCAGAACACCATAAATATCAACCCCCCACATGAGCTTCCTGATAGAGATCCTATTCAGTCTGCAGTCGATGAGTTCTTCTGTCCAAAGATAATCCTCTGCCAAGAATATGGGTGTAAAGGGCTAAGAGAGTTCTCCCAGAGAGAGTTCTGCCACGGTGCTCCTCCCTTCATCATCCTTAACATGCAGATGTGGAAATCAGAGGACCTTTCCTATGTTCCATACCATTTGGCTTTGTCCGATCACAGGTACTCTCTAGAGGGTGCCACTCTCTTCAACAGGGAGGAACATCACTACTCTGCAGCGTTCCAAATCGACGGGTACTGGATGCACTACGACGGGCTTCGGAGTGACAACTTGATCTTACTGAACAAACCACCGGAGCTGCTGCTTCTGTCCTCCCTGGTGTATGTCCGATCTCATGAAAAATGACACGTGCATCCTTCAACGCGGACGTGTCCAGTCTTTTCTGCAGTCTTTTCGTTCCAGCCAAGATGCAAGCCACACCTGATGCCACTTGTTTATTCAATTTGTCTCAGCCTTCAAATGAGTTATATCAGGTATGAGTGTTGTTTGGCTGGAATGGAAACTTACAGCTACACTGCAGATAAAACTCTGCGTCAGAATAAGACAGAAGCCTGGAAAGGGTTAAAGCATCATCACAAAGTCTTTGGATTCTCCTCCTTTCCCTCTTTTCTGTGTCCTTGCCTTGTTAATGTAGTCAAGGTAATCCTTGCTGTATATTTAGTCAGTCAGTTAACTCACCAATACTTTTATTACGAACATTCTCTATTAAAGACTGCAAATATTTTGTTAGTATTCTGGCTTTTCTGTAATTCTAGGGATAAATtgtagctcttttttttttttttttttacttttacaaaaTAATGCTTTATACTTTTGTAATAAATGCTATAATTCGGCAAAGCCGAGTTAAACAGCTTCACTTTTTAGATTGTGCTTGGAATCCAAGAATTTGTAAATGGACTGTAATAGTTCTGGGCCGGTATGGGAAACTGTAAGAACGTTCCtctatagaaaaaaaacccaacaaatcATGCACAAATGTCCGTTTCCTAAAggcatggttaaaaaaaatgacagcgaACACAAAGATCCAGTAAATCAGAAGACATTCTGCAATCCAGCGATGCTTTAAAAGCTTCATAGAATCCAGCTATTTTGGTGATGCGAGCAGATGCACACGGCAGCAATGTTTTTAAGTACGTTACTCAGAAACAGCCAGAAGTGTGACCGACTATAGAGCAAGTGACTAATCAACACCAGAAAAAGCTGTTAGTTTGCACAGTGTTATATAACTGATGTCGCAGAAAGTGCCAAATCGACTTCTCAGGAAGCAAGACGAATTTTTTTGTCCTCATTATGAAATAACAGTTCTGTGCTGATGTATGTTGTAATATATACTTAATTACGTTTGCTCAGTTTGTGTACGAATTTCACAGACGTTCTGCTTTCCTACAAAATGTTATCACATACTAGCCCTGAATTCGGATGTATctcttattttttgtttgtttgtttgtttgttggcagtaaggcttgtgtttaaattttatacTTTTCTTATCATTCTTTCTCATATATCCCTCAAAGCTTAATTAAAGCTTAAATACACGTGTGTGACCCGTACAGTGATAAAATCTGATTAAGTAACAGTTTTAAAAACTAATTCTGGCCTGTATGAGTAATAGTGTGtcagtttttaattgttttttctcTAAATTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926912.2 True 2447 mRNA 0.42 5 23768992 23777316

Neighbor

gene id symbol gene type direction distance location
ush2a ush2a coding upstream 49025 23510201 ~ 23719967 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding upstream 273608 23428300 ~ 23495384 (+)
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding upstream 661043 23067560 ~ 23107949 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding upstream 716318 23024656 ~ 23052674 (+)
LOC113529714 mok coding upstream 1514724 22241015 ~ 22254268 (+)
LOC113534170 fam179b,LOC108270205,LOC108266164,LOC108270136 coding downstream 20226 23797542 ~ 23820314 (+)
fancm fancm coding downstream 43530 23820846 ~ 23864133 (+)
slc25a47b slc25a47 coding downstream 101993 23879309 ~ 23883722 (+)
wdr25 wdr25 coding downstream 117532 23894848 ~ 23909635 (+)
trnah-gug_10 NA coding downstream 184668 23961984 ~ 23962055 (+)
G170610 NA non-coding upstream 393554 23375238 ~ 23375438 (+)
G170568 NA non-coding upstream 618908 23149542 ~ 23150084 (+)
G170567 NA non-coding upstream 619487 23148674 ~ 23149505 (+)
G170484 NA non-coding upstream 749540 23006024 ~ 23019452 (+)
G170482 NA non-coding upstream 765161 23003595 ~ 23003831 (+)
G170717 NA non-coding downstream 953 23778269 ~ 23779227 (+)
G170716 NA non-coding downstream 2007 23779323 ~ 23782089 (+)
G170718 NA non-coding downstream 49747 23827063 ~ 23829186 (+)
G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding downstream 233033 24010349 ~ 24011349 (+)
LOC117598313 NA non-coding downstream 251009 24028325 ~ 24034062 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 746597 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 1948933 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2002619 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2094531 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 3237770 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 686150 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 1217177 24994493 ~ 25000619 (+)
G171329 NA other downstream 1226667 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 1399058 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 1481495 25258811 ~ 25318277 (+)

Expression


Co-expression Network