hspa4l (hspa4l,LOC107586823,LOC107561683,LOC107718856)


Basic Information

Item Value
gene id hspa4l
gene name hspa4l,LOC107586823,LOC107561683,LOC107718856
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15811342 ~ 15823965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933674.2
AGTTTTACCGGTGGAGAACATCAGTGCAGCCTGCGAGAACGCTGTAGAACCGTCCTGTGTTAGGATTAGTCTCAAAAAAAGGGCTGGCTAAAGCTTAGCTTACATAATAGCTAGTGACTCTTACCTCGGTAGATACAGTCACCTATTTTAGCTTAACTGTGGTAGGTTATTCTCATCCAAATTCTAAGAGAGAGGATTTGGAAGGGACAGGAGAAGATAAAGGTTGAATATGTCTGTGGTAGGTTTTGATGTGGGTTTTCAGAACTGTTACATCGCTGTTGCCAGGAGCGGCGGCATTGAAACCATTGCGAATGAGTACAGTGACAGATGCACTCCGGCTTGTATTTCTTTGACGTCTAAAAACAGAACCATTGGAAATGCCGCAAAGAGTCAGATCATAACAAATTTTAAGAACACAGTCCATGGCTTTAAGAAGTTCCATGGTCGAGCATTCGACGATCACTttgttaaatatgaaaaatccaAGTTGCCTTACAGTCTTCACAAGCTGACCAATGGCAGCACTGGAGTAAGGgtTCGTTACTTGGATGAAGATAAGGTGTTCACCATTGAGCAGGTGACAGCCATGTTGCTCACTAAGCTGAAAGAGACTTCTGAGAGTGCACTAAAGAAACCGGTAGTGGACTGTGTGATTTCTGTTCCTAGTTTCTTTACTGATGCAGAGCGAAGATCAATGATTGATGCCGCTCAGATCGCTGGGCTGAACTGCTTGAAACTGATCAATGACACAACAGCAGTGGCGTTAGCCTATGGAATCTACAAGCAAGACTTACCAAACCCAGAAGAAAGGCCCCGTAATGTTGTGTTTGTGGACATCGGTCACTCATCTTATCAAGTATCAATTGTCTCATTCAACAAGGGGAAACTGAAGGTGTTGGCCACAGCATTTGACCCCTACTTGGGTGGGCGTAACTTTGATGAAGCACTCGTAGAGTATTTCTGTGAAGAGTTTAAAGGTCGTTATAAGTTAAATGTGAAGGACAACCCTCGAGCCCTGCTGAGGCTCTACCAAGAGTGTGAAAAGTTGAAAAAGCTCATGAGTGCCAACTCTTCAGAGCTACCACTTAACATCGAGTGCTTCATGAATGACATTGATGTTTCAGGGAAGATGAATAGGGGCCAGTTTGAGGAGCTGTGTGCCCAGATTTTGATGAGAGTGGAAGCACCACTTAAAGCTGTCATGGAACAATCaaAGCTAGGCAGAGATGAGATCTATGCGGTTGAGATTGTTGGTGGTGCTACTAGGATTCCAGCCATTAAAGAGAGAATTTCGAAGTTCTTCTGTAAAGACGTCAGTACCACCCTGAATGCAGATGAAGCAGTGGCACGAGGATGCGCGCTACAGtgtgcaatCTTGTCTCCAGCATTTAAGGTCCGTGAGTTTTCTATCACTGACGTGGTTCCCTTCCCAATCACTCTTCGCTGGAAGTCTCCCACAGACGAAGGTGTTAGTGAATGTGAGGTGTACAGCAAGAACCATGCAGCACCCTTCTCCAAAGTTATCACTTTCCACAAGAAAGAGCCCTTTGACCTGCAAGCGTTTTACAGCACTTCACAAGATTTGCCATTCCCAGACACCGCAATAGGCCGTTTTACTATCCAGAATGTTGTGCCCCAGTCTGATGGAGACAGTTCGAAGGTCAAGGTGAAAGTGCGTGTAAATGTGCATGGCATCTTCAGTGTATCCAGCGCCTCGCTGATCGAGAAGCAGAAAGGTGAAGCGGAGGACGTGCAAATGGAGATGGAGCCCACAGTTCAGAATGAGAGCAGGCAAGAAGAGCAGactAAAATGCAAGTGGACCAAGACGGTCAAGGTGAGCAGCCTAATGAAGAAGGCAAAGCGCCAGGTTCTAATCCTAAGGATGGAGCGTCTCCTGAAAAGCAAGAGCAGGGTGCAGGCTCGAGCAAACCCAAGCCAAAGGTGAAGAGTGTTGAACTGCCCATCTTTACCTGCACTGTCAGGCAGCTGGACAGAGAGCTACTGAACAGCCTTGTGGAGGAGGAACGGAAAATGATAGTTCAGGATAAGCTGGAGAAGGAGAGGAATGATGCCAAGAATGCTGTGGAGGAGTATGTGTATGACCTGCGAGACAAGCTGTGTGGCATCTATGAAAAGATCATCACTGAGGATGACAGCAACAGACTCGCTCTAGTGCTTGAGGATACTGAGAACTGGCTGTATGAGGAGGGAGAAGACCAGTCAAAAGAGATCTATCTGGATAAACTGGCTGAACTCAAAAGGTTTGGTGAGCCCATTGAAGAGCGGTACAGGGAGCAGGAGGAAAGGCCACATGCTTTTGATGAGCTAGGCAAGAAAATCCAGCTCTTTTTGAAGGTTGTGGAAGCATATAAGCAAAAGGATGAACGTTACCAACATTTGACTGCTGAGGAAATTAGCACTGTGGAGAAGAGTGTGAATGAGGCCATGAGCTGGATGAACACTAAGATGCTCATTCAGAGCAAACTCAGCACCGCTCAGGATCCTGCAGtgaaagtagcagagatcatacAGAAGATTCGGGAGTTAGAGGAGTTTTGCAGTCCTGTGGTGAACCAACCCAAACCCAAAGTTGAGGAGCCAGCAGAGGATAACAGGGCCCACAATGGTCCTGCAGCAGGACATGGGGCTGATGGCAAGAGCAACCAGCAGACTAAGAACCACGGAGAGATGGAAGTGAACTGAACTGCTTATCCAGccttgctctcactctcacagaAGACTTCGTCAGACTCATGCAGCTGACTCCTAACCTGTAGCCAGtaccagtctctctctgtccacaaTTCCGCTGGTTGTAATTTGCACCTCTGCTTGTTAAAGTCTGATTTCTG
>XM_034307764.1
CATTTAACACATCTTAATCAACTCATCTTAATCAACTGATCACAAAAGCCTTCATGGGCTGAATGTGGTGTGTTAGAAGGGGAAATGTTAAACTCTCTttccagggtcctgGTTTGATCcctttgggttctctggtttcttgcAACCTCCCAAAGATGtgcagGGCTTGTATTTCTTTGACGTCTAAAAACAGAACCATTGGAAATGCCGCAAAGAGTCAGATCATAACAAATTTTAAGAACACAGTCCATGGCTTTAAGAAGTTCCATGGTCGAGCATTCGACGATCACTttgttaaatatgaaaaatccaAGTTGCCTTACAGTCTTCACAAGCTGACCAATGGCAGCACTGGAGTAAGGgtTCGTTACTTGGATGAAGATAAGGTGTTCACCATTGAGCAGGTGACAGCCATGTTGCTCACTAAGCTGAAAGAGACTTCTGAGAGTGCACTAAAGAAACCGGTAGTGGACTGTGTGATTTCTGTTCCTAGTTTCTTTACTGATGCAGAGCGAAGATCAATGATTGATGCCGCTCAGATCGCTGGGCTGAACTGCTTGAAACTGATCAATGACACAACAGCAGTGGCGTTAGCCTATGGAATCTACAAGCAAGACTTACCAAACCCAGAAGAAAGGCCCCGTAATGTTGTGTTTGTGGACATCGGTCACTCATCTTATCAAGTATCAATTGTCTCATTCAACAAGGGGAAACTGAAGGTGTTGGCCACAGCATTTGACCCCTACTTGGGTGGGCGTAACTTTGATGAAGCACTCGTAGAGTATTTCTGTGAAGAGTTTAAAGGTCGTTATAAGTTAAATGTGAAGGACAACCCTCGAGCCCTGCTGAGGCTCTACCAAGAGTGTGAAAAGTTGAAAAAGCTCATGAGTGCCAACTCTTCAGAGCTACCACTTAACATCGAGTGCTTCATGAATGACATTGATGTTTCAGGGAAGATGAATAGGGGCCAGTTTGAGGAGCTGTGTGCCCAGATTTTGATGAGAGTGGAAGCACCACTTAAAGCTGTCATGGAACAATCaaAGCTAGGCAGAGATGAGATCTATGCGGTTGAGATTGTTGGTGGTGCTACTAGGATTCCAGCCATTAAAGAGAGAATTTCGAAGTTCTTCTGTAAAGACGTCAGTACCACCCTGAATGCAGATGAAGCAGTGGCACGAGGATGCGCGCTACAGtgtgcaatCTTGTCTCCAGCATTTAAGGTCCGTGAGTTTTCTATCACTGACGTGGTTCCCTTCCCAATCACTCTTCGCTGGAAGTCTCCCACAGACGAAGGTGTTAGTGAATGTGAGGTGTACAGCAAGAACCATGCAGCACCCTTCTCCAAAGTTATCACTTTCCACAAGAAAGAGCCCTTTGACCTGCAAGCGTTTTACAGCACTTCACAAGATTTGCCATTCCCAGACACCGCAATAGGCCGTTTTACTATCCAGAATGTTGTGCCCCAGTCTGATGGAGACAGTTCGAAGGTCAAGGTGAAAGTGCGTGTAAATGTGCATGGCATCTTCAGTGTATCCAGCGCCTCGCTGATCGAGAAGCAGAAAGGTGAAGCGGAGGACGTGCAAATGGAGATGGAGCCCACAGTTCAGAATGAGAGCAGGCAAGAAGAGCAGactAAAATGCAAGTGGACCAAGACGGTCAAGGTGAGCAGCCTAATGAAGAAGGCAAAGCGCCAGGTTCTAATCCTAAGGATGGAGCGTCTCCTGAAAAGCAAGAGCAGGGTGCAGGCTCGAGCAAACCCAAGCCAAAGGTGAAGAGTGTTGAACTGCCCATCTTTACCTGCACTGTCAGGCAGCTGGACAGAGAGCTACTGAACAGCCTTGTGGAGGAGGAACGGAAAATGATAGTTCAGGATAAGCTGGAGAAGGAGAGGAATGATGCCAAGAATGCTGTGGAGGAGTATGTGTATGACCTGCGAGACAAGCTGTGTGGCATCTATGAAAAGATCATCACTGAGGATGACAGCAACAGACTCGCTCTAGTGCTTGAGGATACTGAGAACTGGCTGTATGAGGAGGGAGAAGACCAGTCAAAAGAGATCTATCTGGATAAACTGGCTGAACTCAAAAGGTTTGGTGAGCCCATTGAAGAGCGGTACAGGGAGCAGGAGGAAAGGCCACATGCTTTTGATGAGCTAGGCAAGAAAATCCAGCTCTTTTTGAAGGTTGTGGAAGCATATAAGCAAAAGGATGAACGTTACCAACATTTGACTGCTGAGGAAATTAGCACTGTGGAGAAGAGTGTGAATGAGGCCATGAGCTGGATGAACACTAAGATGCTCATTCAGAGCAAACTCAGCACCGCTCAGGATCCTGCAGtgaaagtagcagagatcatacAGAAGATTCGGGAGTTAGAGGAGTTTTGCAGTCCTGTGGTGAACCAACCCAAACCCAAAGTTGAGGAGCCAGCAGAGGATAACAGGGCCCACAATGGTCCTGCAGCAGGACATGGGGCTGATGGCAAGAGCAACCAGCAGACTAAGAACCACGGAGAGATGGAAGTGAACTGAACTGCTTATCCAGccttgctctcactctcacagaAGACTTCGTCAGACTCATGCAGCTGACTCCTAACCTGTAGCCAGtaccagtctctctctgtccacaaTTCCGCTGGTTGTAATTTGCACCTCTGCTTGTTAAAGTCTGATTTCTG

Function

symbol description
hspa4l Predicted to enable ATP binding activity. Predicted to be active in cytosol and nucleus. Is expressed in central nervous system and lens. Orthologous to human HSPA4L (heat shock protein family A (Hsp70) member 4 like).

NR:

description
PREDICTED: heat shock 70 kDa protein 4L

GO: NA

KEGG:

id description
K09485 HSP110; heat shock protein 110kDa

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933674.2 True 2853 mRNA 0.47 19 15811342 15821565
XM_034307764.1 False 2680 mRNA 0.47 20 15811342 15823965

Neighbor

gene id symbol gene type direction distance location
plk4 plk4,LOC107718857,LOC107561682,LOC107664465,LOC107586821,LOC107703461 coding downstream 2509 15802239 ~ 15808833 (-)
itpk1b itpk1,itpk1b,LOC108435758,LOC107561681,LOC107664466,LOC107703450 coding downstream 11678 15763858 ~ 15799664 (-)
LOC113538816 npc2 coding downstream 100598 15706625 ~ 15710744 (-)
atg2b atg2b,LOC107738272,LOC107664023 coding downstream 108621 15680921 ~ 15702721 (-)
msh4 msh4 coding downstream 132132 15665480 ~ 15679210 (-)
mrpl35 mrpl35 coding upstream 19505 15843470 ~ 15847375 (-)
si:dkey-21a6.5 NA coding upstream 24072 15848037 ~ 15855183 (-)
nt5c1ab LOC108269929,LOC108425685,LOC106610886 coding upstream 34765 15858730 ~ 15863628 (-)
zfyve28 zfyve28 coding upstream 40155 15864120 ~ 15878344 (-)
rtkn2a LOC108269925 coding upstream 59433 15883398 ~ 15889538 (-)
G166286 NA non-coding downstream 203820 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 320334 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 565433 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 565879 15244866 ~ 15245463 (-)
G165949 fam161b non-coding downstream 566844 15244285 ~ 15244498 (-)
G166319 NA non-coding upstream 71702 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 109192 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 176254 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 443264 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 620876 16444841 ~ 16446005 (-)
eml5 eml5,LOC108435760 other downstream 48624 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 147847 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 489291 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 693978 15107120 ~ 15117364 (-)
nenf nenf other downstream 729137 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 1049314 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1342903 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1791773 17615738 ~ 17624534 (-)
G167566 apob other upstream 2481778 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2551438 18375403 ~ 18382455 (-)

Expression


Co-expression Network