LOC113538555 (LOC108269630,LOC108441822)


Basic Information

Item Value
gene id LOC113538555
gene name LOC108269630,LOC108441822
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19498748 ~ 19524868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933698.2
TGCTATTCCGTTACAGTGGGGCAAAATGGCGGCTGTCATTCAGAATCCTCTAAACGCGTTGGGTGACCAGTTTTACAGAGAAGCCATCGAGCACTGTCGCAGCTATAATGCTCGTCTGTGTGCTGAGCGCAGCGTCCGCCTGCCCTTCCTCGACTCTCAAACCGGCGTCGCCCAGAACAACTGCTACATCTGGATGGAGCGTCATCATCGTGGACCGGGTTTGGCAGCTGGCCAGATGTATACATACCCTGCCCGCTgctggaggaagaagaggaggttACACACTTCCATGGATTCAAGCCTTCACATCTATGGTCTAAATATAGataacGGCCTGACAGCTAAAGATACTTTGCCTACACCAAGCACTACGCTGGAGGCTTTGCTGAGAGGGGACAGCTTGGACAAGAGGAACAGCACCAGAGACGAGGACCTGCTGGAGATTCAGAGAGTTTTGGAGGCTGACGCCAACGAAGATGGTTACCATGACGATGAAGACTTTGAAGTGGACATACCAAAAAGGAAACACCGGGGAAAAGGCAGAGGGCGAGGCTCAGGACGCCGGAGGACAGACCATGATGACCAAGATAAGCCATATATCTGTGAAAACAGATACAAACAAAAGCATAACTCAAAAACTGCAGCTTCAGTCTGTGGGAAGCGCTACAGGAATCGCACTGGCTTAAGCTACCACTATGGCCATAGCCACATTGCTGATAAGGAGGGACCTCAAGCCAGAGACCAAGAGCCATCACAGTCTCCAGCCATCAACCACCGTCCTCACAGTCGCAAACATCAGAAGAGTCCAGATGAAGCTCATACACTGAACAATTTCTGCAAAGTCTGTCAAGCACATTCAGACTCCAAACTGAAAGATGGCAAGTGCTCCAAGTGTAGCCGCTTAGGTGGACAAGATGAAGCAAAAGAGGAGAAGCCTTTCGCTGGAGCGGAGGAGCTGTTTGGTGCCAGCTCTGAGAGCGACACTTCTACATTTCATGGCTTTGAGGAGGATGAGCTGGAAGAGCCCCTGTCCAACAGCGGCGAGGCCTCTCCAAAGGGCAGATAGAGAACAGTTTAAAAAGACGTGCCGTTCCTTTCTAACACAGCGCATCCCCCTGCAAAAATTCTGCTGCTTCTTTTTAAAGgtttcgtttgtttgtttgtttgttttttccctctccctTTTATTGGAAGCACAAGTCATTGTATCAGAAGATGATGTATGAAAGTTTTATCTTCCTTTTAATGAGTTgtggctattattattattactattactactaccattattatttatactttaagAGCAAATAggaacagac
>XM_026933699.2
TGCTATTCCGTTACAGTGGGGCAAAATGGCGGCTGTCATTCAGAATCCTCTAAACGCGTTGGGTGACCAGTTTTACAGAGAAGCCATCGAGCACTGTCGCAGCTATAATGCTCGTCTGTGTGCTGAGCGCAGCGTCCGCCTGCCCTTCCTCGACTCTCAAACCGGCGTCGCCCAGAACAACTGCTACATCTGGATGGAGCGTCATCATCGTGGACCGGGTTTGGCAGCTGGCCAGATGTATACATACCCTGCCCGCTgctggaggaagaagaggaggttACACACTTCCATGGATTCAAGCCTTCACATCTATGGTCTAAATATAGataacGGCCTGACAGCTAAAGATACTTTGCCTACACCAAGCACTACGCTGGAGGCTTTGCTGAGAGGGGACAGCTTGGACAAGAGGAACAGCACCAGAGACGAGGACCTGCTGGAGATTCAGAGAGTTTTGGAGGCTGACGCCAACGAAGATGGTTACCATGACGATGAAGACTTTGAAGTGGACATACCAAAAAGGAAACACCGGGGAAAAGGCAGAGGGCGAGGCTCAGGACGCCGGAGGACAGACCATGATGACCAAGATAAGCCATATATCTGTGAAATCTGTGGGAAGCGCTACAGGAATCGCACTGGCTTAAGCTACCACTATGGCCATAGCCACATTGCTGATAAGGAGGGACCTCAAGCCAGAGACCAAGAGCCATCACAGTCTCCAGCCATCAACCACCGTCCTCACAGTCGCAAACATCAGAAGAGTCCAGATGAAGCTCATACACTGAACAATTTCTGCAAAGTCTGTCAAGCACATTCAGACTCCAAACTGAAAGATGGCAAGTGCTCCAAGTGTAGCCGCTTAGGTGGACAAGATGAAGCAAAAGAGGAGAAGCCTTTCGCTGGAGCGGAGGAGCTGTTTGGTGCCAGCTCTGAGAGCGACACTTCTACATTTCATGGCTTTGAGGAGGATGAGCTGGAAGAGCCCCTGTCCAACAGCGGCGAGGCCTCTCCAAAGGGCAGATAGAGAACAGTTTAAAAAGACGTGCCGTTCCTTTCTAACACAGCGCATCCCCCTGCAAAAATTCTGCTGCTTCTTTTTAAAGgtttcgtttgtttgtttgtttgttttttccctctccctTTTATTGGAAGCACAAGTCATTGTATCAGAAGATGATGTATGAAAGTTTTATCTTCCTTTTAATGAGTTgtggctattattattattactattactactaccattattatttatactttaagAGCAAATAggaacagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933698.2 True 1322 mRNA 0.48 10 19498748 19524868
XM_026933699.2 False 1280 mRNA 0.48 9 19498748 19524868

Neighbor

gene id symbol gene type direction distance location
grhl1 grhl1,LOC108269933 coding downstream 76823 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 106566 19388971 ~ 19392182 (-)
fank1 fank1,LOC108436747 coding downstream 134509 19353863 ~ 19364239 (-)
abraxas2 fam175b coding downstream 485794 19001132 ~ 19012954 (-)
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 564953 18931562 ~ 18933795 (-)
LOC113538672 LOC108269607 coding upstream 3799 19528667 ~ 19583250 (-)
LOC113538986 LOC108269623,LOC108430634 coding upstream 104366 19629234 ~ 19643615 (-)
LOC113538599 inafm2 coding upstream 247932 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 315503 19840371 ~ 19867165 (-)
bub1bb bub1b coding upstream 348554 19873422 ~ 19879335 (-)
G168354 NA non-coding downstream 60 19494063 ~ 19498688 (-)
LOC113538592 NA non-coding downstream 49020 19441089 ~ 19449728 (-)
G168304 NA non-coding downstream 72069 19319838 ~ 19426679 (-)
LOC113538783 NA non-coding downstream 212907 19280278 ~ 19285841 (-)
G167883 NA non-coding downstream 696055 18802441 ~ 18802693 (-)
G168399 NA non-coding upstream 61474 19586342 ~ 19586548 (-)
G168405 NA non-coding upstream 73500 19598368 ~ 19598898 (-)
LOC117598328 NA non-coding upstream 154629 19679497 ~ 19680669 (-)
LOC117598314 NA non-coding upstream 158371 19683239 ~ 19684146 (-)
LOC113538910 NA non-coding upstream 162363 19687231 ~ 19688109 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 532135 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 651052 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 855859 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 1116293 18375403 ~ 18382455 (-)
G167566 apob other downstream 1182541 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 62056 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 64500 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 75262 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 488711 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 773643 20298511 ~ 20301554 (-)

Expression


Co-expression Network