siva1 (siva1)


Basic Information

Item Value
gene id siva1
gene name siva1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20169130 ~ 20174078 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933739.2
AGAGACTTCGCGggaaaagagagatagaggttTGTTTGCGCTCCACGCAGGGTTAGCGGTTGTGTTTCAGCTGAAGAACATTTCGTTATTTTTTCCTTCAGAATGCCTAAAAGGTCCTGCCCTTTCACTGAATCGTTTTCGACACAGTATAAAATCCATGTTGGACAAAAGGAGCTGAACCTGCACGGAGTTTTGGGAAACAAATACAGACAGGAAGTTTACGAAAAGACCAAGAACCTGCTCTTCAATGGGACCCGAGCGGTAATGGGGCGAATTTGGAAGGTGGATGCAGCGGCGAAGTGCGCTGATGTGGATGTGTGTAATCAGGGTGATGTGACGCCTGCAAATAATCAGCTGCTACTCAAAGGACAGACTCTGATTGGGCTGGATGGGAAACTGAAGAAAGGCAAGGCAGTTTCAGGCAGTGTGACCGCTCCGGCTGTGTGTGCCGTGTGTCAGAGGTCATCAGGAGTGAGGACGGCGTGCTCTCAGTGCGATCGCCCTGCGTGTCCCTCCTGCACACAGCAGTGCAGCAGCTGTTCCAGCCGCTGCTGCTCCATCTGTACAGTCACAGATTACAGTGAGCGTTATGACAAAATCCTCTGCTGCAGCTGCTCTTCATGATGAGGTGGATGCAAAGATGGACTGGATCGATGGCTGAAGGAAAGGATAAAGTGTTTGTATTTTGCTTGTAATAAACTTTAGCGCATTCCACTCtaaatgaattttatataacttttaCACTTATATAATCGAgtttgtgtgtacatatgtattttttttaatcatttaaataaatacttgaaCAActcgt

Function

symbol description
siva1 Predicted to enable CD27 receptor binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway. Is expressed in male organism. Orthologous to human SIVA1 (SIVA1 apoptosis inducing factor).

NR:

description
PREDICTED: apoptosis regulatory protein Siva

GO: NA

KEGG:

id description
K22744 SIVA1; apoptosis regulatory protein Siva

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933739.2 True 814 mRNA 0.46 4 20169130 20174078

Neighbor

gene id symbol gene type direction distance location
akt1 akt1,LOC107716055,LOC107703621 coding downstream 42791 20065720 ~ 20126339 (-)
cep170b cep170b coding downstream 110128 20027293 ~ 20059002 (-)
LOC113538610 pld4 coding downstream 143494 20019219 ~ 20025636 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding downstream 260383 19891594 ~ 19908747 (-)
bub1bb bub1b coding downstream 289795 19873422 ~ 19879335 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding upstream 28041 20202119 ~ 20212962 (-)
inf2 inf2,LOC107745357,LOC107678755 coding upstream 45796 20219874 ~ 20255875 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding upstream 195056 20369134 ~ 20372103 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding upstream 270117 20444195 ~ 20453800 (-)
acp7 acp7,papl coding upstream 327071 20501149 ~ 20521426 (-)
G168759 NA non-coding downstream 17827 20150293 ~ 20151303 (-)
G168758 NA non-coding downstream 19228 20149490 ~ 20149902 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding downstream 20394 20145267 ~ 20148736 (-)
G168750 NA non-coding downstream 62272 20106213 ~ 20106858 (-)
G168747 NA non-coding downstream 68558 20099127 ~ 20100572 (-)
G168908 NA non-coding upstream 268919 20442997 ~ 20443772 (-)
G169104 NA non-coding upstream 364784 20538862 ~ 20540283 (-)
G169109 NA non-coding upstream 373567 20547645 ~ 20547877 (-)
G169118 NA non-coding upstream 390077 20564155 ~ 20564828 (-)
G169126 NA non-coding upstream 399329 20573407 ~ 20573613 (-)
srp14 srp14,LOC106610862 other downstream 150413 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 559352 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 573916 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 580228 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 1202517 18961708 ~ 18966613 (-)
LOC113529462 LOC108269960 other upstream 124433 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 148686 20322764 ~ 20330746 (-)
G169119 NA other upstream 390851 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 639611 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 914225 21088303 ~ 21119625 (-)

Expression


Co-expression Network