c10h1orf115


Basic Information

Item Value
gene id c10h1orf115
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18287763 ~ 18290475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933766.2
TAGTTAATTACGTCAGTAAAAGTGACAGGCCGGGAGTTGTTTCAGCTGGATCACAAAATGTCCCGGAGGAAACTTCGTAAATCCAAACAGAAGTGGGAAAACAAAAAGGAGGACAAATCGAAAATCATCAGCTGTGTTGAGGGAAAGTCTGTGGGAGCGAAGTGTGAGGAGTTTTcctcagagctgtgtgtgtgtgagcgcgagCCGCAGAACCAGCAGCGCGCGAAGTCCACTGGCCGCAAAGAGAAATCATCCAAACAAGTGCATTTCACTGTGCTGCAGGACAAATACGAGCCTCTGGAGGAGGACAGAGCCTCGGATACAGCCACAGAAGAAGACCACAGggaaaaacaggagaaatatAAGAGGTTCAGGAAAaACTTTGGAAAAGCTCTTCGCTTCACTTGGAAGTGTCTGGTTGCTGGACTACAGAGTTTCAGCGCGTCATACTCCGGGCCTCTGAGTGCAGCTACCACGCTGGTGCCTGAGATCCAGAGGACAAGGCCCAGAGCATGATGGTACAAAAACCTTTGATAGTGAACCAACCCCCTCTCaatattttatgatgttttaAGGTACGATGCTTGCCAGAATGTAAGGAATTTCTGTAGCTCTTTGGATATGATTGATTCTTCAATAATCCTGATGTACTGTGGCAGTCACTCAAGTGTTATAAATTGCTCTTCTCCATCTTAGACAGCTGCAGGTCTGAACATAATTGCTCATAATTGAGCATAAGTCCTGTCATGCATGAAGTAAACTGACTATTTAAACTGGTTTAGATACTTATTCTCTTAAAAAAGGTGTACTCCTTTTTTCCTATAAACACCATGATGATGTACAGTTGAAGCTAATAAgaagtttttttaatcttttttttt

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko04610 Complement and coagulation cascades
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933766.2 True 881 mRNA 0.43 2 18287763 18290475

Neighbor

gene id symbol gene type direction distance location
alkal2b LOC108425626 coding downstream 38531 18243360 ~ 18249232 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding downstream 57288 18191959 ~ 18230475 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding downstream 360713 17924721 ~ 17927050 (-)
asap2a asap2 coding downstream 506711 17708618 ~ 17781052 (-)
iah1 iah1 coding downstream 588113 17694780 ~ 17699650 (-)
yy1a yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103 coding upstream 109236 18399711 ~ 18403969 (-)
evla LOC108425620,LOC108270303 coding upstream 124903 18415378 ~ 18437153 (-)
eml1 eml1 coding upstream 168997 18459472 ~ 18512607 (-)
pkdccb LOC108270133 coding upstream 229422 18519897 ~ 18525899 (-)
rpusd2 rpusd2,LOC103399345 coding upstream 261208 18551683 ~ 18556050 (-)
G167572 NA non-coding downstream 15947 18271603 ~ 18271816 (-)
G167250 NA non-coding downstream 614990 17669650 ~ 17672773 (-)
G167152 NA non-coding downstream 750988 17536419 ~ 17536775 (-)
LOC117598352 NA non-coding downstream 820989 17452366 ~ 17466774 (-)
G167124 NA non-coding downstream 925607 17361953 ~ 17362156 (-)
G167577 NA non-coding upstream 4508 18294983 ~ 18296555 (-)
G167579 NA non-coding upstream 11630 18302105 ~ 18303339 (-)
G167580 NA non-coding upstream 26003 18316478 ~ 18316699 (-)
G167617 NA non-coding upstream 108696 18399171 ~ 18399424 (-)
G167618 NA non-coding upstream 114078 18404553 ~ 18404775 (-)
cmpk2 cmpk2 other downstream 663229 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1039940 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1389033 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 2525045 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 2624268 15633002 ~ 15663495 (-)
G167566 apob other upstream 15268 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 84928 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 309820 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 549140 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 671233 18961708 ~ 18966613 (-)

Expression


Co-expression Network