plcb2 (plcb2)


Basic Information

Item Value
gene id plcb2
gene name plcb2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19778568 ~ 19809259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933767.2
gttaaaagcgctatacaaataaaataaaattgaattgaattgaatgtgaaTGTCAGAGGAAAGGTAAGTCCAGGTGCGTTTAGTTGGAGTGGAAAACTGTAATAATTCTGCATAACATTGCCTTTATGCCCATTCTCTGTATGGCGATAATTGTGAAGTTGACTATGCTAAGAATTCATGTAAGCTAAAGAAGTCTCTTTCTAGTGACCAACCTCCTTGtaaacacacatattatatatggcaataaacaaaaagaaaaagtgaacaAATGCATGTTTAATGTTCAGTACAGAGTTTGTAATATCAACCTTGCGCTTTCTAGaagcattttattcttttatagttagatttttaTAAGTAACTATGAAAAAGTATGAAATTAAGCAGCACTGAGCACTGTAAAGGCTTGAAAAGAataatatactttttaaatagaaaatttgCTAACTTTAAGCATTTAAACTAATAGTTCTGAGTTAGGAATGGCAGTAGCTTAGTGTGCCTGATGATGTTAGAGAGGTCGTCTCATACTAACACCTGCCTCCATGATTTACATATGTTATTGTTGGGCTTTTGGACATTTGACTATTATCCAAACTACTCTGTAGAAAGACGATTTAGCCATTTTTTCCTCCCTTTTAGTTCTAATGTATCATTATTCAACTGCAATCTTACttacttatatttttattttacgcCTACAAAAGACTTGGATTTATTTGGCACTACAGAAGTCGGTTTTCAGGAAACAAAAAGCCTAGAAACATTATTAAGTCCTACAAGATTCTCCCAATGCCATGGAGAATCTCCACTACCAGTATTATGTAGACAGATTTTAAGGTTTTAATCTTTTAACTGCTTCctttaacatgtttataaaataGGGCTGTGGGTTAagtatgtgtttttaaaatctctACATTCAGAAGTGTGTTTAAGACTGAAATTAAACACAACTAGTAAAAAAGGTTCAGGTAAAAGATGGGAAATGCATGCTTTTAAACAACATCATCCatcacaatacaatacaatacatccTATATACAGTGCATATTATTATGATATACTGTACGGGTCTGTATGTTATCCATATTAGACTCTAAAAGCCATTTTTTCAACCATATTGAAGCTCACATGAATCATCTGGAATGTTTTGGTAGTTGCGTTCTCCACCCTCGAAATACTCATTTGCAAGTCATATTAAAGGAAAGGTGGTTTTAGGAGTGTTGGTTCAGAGTCTACAGCTGTCATTGTGCATGTCAGCCCCAATGCCCCATCACCAAAGAGCGAGCTGACTAGGACACCATGATCAGGAAGCGTTATATTCTCAAAGAGCCTGAGGTCAAAGACTATATGGTCAAAGGAGAGAGATTCACAAAATGGAAAGAAGACTCATCACGCACTGTACCCGTCACTATGAAGATGGATTCAAAAGGATTCTTCCTTTACTGGATAAACTCGAGCAAGGAAGTAGAAATTGTGGATGTGGCGACCATACGGGACACACGGACAGGGAAATATGCAAAACTCCCCAAACATCAAAAAGTCCGAAATACATTCAACATGGACTTCCCTGACAGTAATTACTTAGCCAAGACCTTCACCGTTGTTACTGGACCTGACACGGTCAATCTCACCTACTACAACTTCTTTGCAGCCAAAGAGAAAATAGTGCAGAACTGGGCCGATGACATCCTGGCCATTGCCTACAACCCCCAAAGGGCCAACATCTGCAGACAAATCTACCTGGATAAACTGTATGTTCGCCTCACACTGCAAACCAACAAGGATGGCAAGATTCCTGTTAAATATATCTATAAGATGTTTCCAGCTGACAAGAAAAGAGTTGAGAGTGCACTATCAGCTGCAAAGCTTCCTAAGGGAAAGtTTGACTCCATAAAGCCTGATGTGTTCACTGAAGCTGCATTCAAGACCTTCCTGATGAACCTTTGTCCTAGACCAGAGATCTATGAAATCTTCAGCACCTATTCTAACAAGCCCTACATGACCAAGGAGGTCTTTAGCAAGTTCCTGTATGAGAAACAGCGAGACTCGAGGCTTAATGAAGAGCTTTACCCGCCACTGAGACCTGATCAGGTGAAAGCCCTCATCGACAAGTACGAGCCCTCCTCCACTAATTCAAACCGCGGTCAGATAACCCCAGAGGGTCTACTCTTCTTCTTAATGGGGCCTGAGACAACACCTGTGATGTTAGACAAAATGGCCCAGTGCCATGACATGACCCAGCCCATCCCTCACTACTACATCAAATCCTCCCACAACACCTATCTCACTGCCGGTCAGTTCTCAGGCACCTCCTCTCCAGAGATGTACCGTCAGTGTCTGCTTGCTGGATGCCGTTGTTTGGAGCTGGACTGCTGGAAGGGCAAACCTCCAGATGAAGATCCAATCATTACTCACGGCTTCACCATGACAACTGAGATCCTTTTTAAGGACGTGATCGAGGCTATTGCAGAGAGTGCATTCAAAACATCTAAATATCCAGTTATTCTCTCCTTTGAGAACCATGTGGATACAGTCAAACAGCAGGAGAAGATGGCTAACTACTGTAGGACCATATTTGGAGACGCTCTACTCACTGAACCCCTGGAGAAGTATCCGTTGAAGCCAGGCCACCAGATCCCCAGTCCTTCTGAGCTGATGGGAAAAATTCTGATCAAAAACAAGAAGGGCCCCACTGGCCCAGCCAAACCTCCaccaaagaaaacacaagagGAGGGTCATGGGGAGAATGCAGGAGAGCATCCTGAGAACCCTGAGAACCAGAACCATGAACATGAGGAGCACCATGATGATCACCACGATGACCACCATGATGACCACCATGACGATGAGGAACATGATGAGGAAAAGATGAAGAACTCAGATGAAGGTACAGCTGGGCAGGAAGTAACAGCTTTTGAGGCGATGTCTTCAATAGTCAACTACATTCAGCCAAACAAGTTCATCTCCTTTGAACATTCTAGGAAAAAGAACAGGAGCTATGCCATCTCTTCTTTTGTGGAAACCAAAGGAGAGCACCTGATATCCAAGAGTGCTGTGGAGTTTGTCGAATATAACAAGAGACAGATGAGTCGAATCTACCCCAAAGGAACACGTATGGACTCGTCTAACTATAGCCCTCAGCCTTTCTGGAATGTAGGCTGTCAGATGGTGGCACTGAACTACCAGACCATGGATTTTCCCATGCAACTGAACATGGCACTGTTCGAGTATAACGGGAGGACTGGGTACCTCTTAAAAAGTGATGTGATGCGGAGGAATGACAAGACGTTTGACCCCTTCACCGACAAGATTGACACCAATGTGCCCAGCACACTCTCTATCAAGATCTACTCAGGCCAGTTCCTATCTGATAAGAATGTGAAAACAGCAGTGGAGGTGGAGATCATTGGCTTGCCTGGAGACCCCAAACGCAAATACCGCACCAAATACACTGCCGTACCAAATGCCATCAACCCTGTGTGGAATGAGGAGCCCTTTGTGTTTGAGAAGATTCTGTTGACAGAATTGGCTTCACTTAGGATAGTGGCCTATGAGGAAGGCGGGAAATTCATTGGGCATAGAATTATTCCCATAGATGCCATCCAATCAGgATTTCATCATCTTTGTCTGCGTAGTGAGAGTAACATGCCTCTGATGCTCCCTGCCCTGTTTGTCTACATTGAGGTGAAGGACTACATCCCTGCTGCTTTTGCTGATTTCACAGATGCTCTCTTCAATCCAGTAAAGTCTACAAAGCCTGCAAAACACGAGAGTGCTAACTTTGTAAGCAAATATGAGATGCCTGGTGCTGCAGCTGTTCCAGCCACAGTGCCTGAAGGTGATGAGGCCCCAGCAGAGGGCGACGCTAACTCTTCAGAAACACCTTCAGATGCGGAGCCTAAATCAGACGCCCCAGAGTCCACTGATGGAGAAAATCCCAAGTCAGATGACCAGCCAGCACTGGCTGATCAAGAGCCACAAGCTTCTGAAGCTGAGCCAAACCCTGAGGTGCCTGCAACCTCAGAAGATGCTCCTCCATCTGAAGCACCTCCACCCACCGAAGAGGCTCCTTCCACTGAAGCACCTGCACCTTCTGAAGAGGCTCCTTCCACTGAGGCACCTCCACCTTCTGAAGAGCCTCTGCCCACTGAGGCGCCTGCACCCACAGAAGAAGCTCCTCCCTCTGAGGCACCTCCACCTTCAGAAGAGGCTCCCCAAGAAACTCCTGCACCATCTGAAACCCCTGAGGCAGAGAATCCCGCTGATCCAAATGagctggcCTCTGTGACCTGTGATGAACTGCAGCAGCACAAGAACTACCTGAAGGTCACCAAGAAGCAGGAGAAAGAGGTGAAAGAGCTGGAAAAGAGGTTCCAGAAGAAGGCCGAGGAGATAACTCAGAAATACAGTGACCTCTTCAAATCCCTCAAGAAGAAGACTTCCCCGAAGAAGAATGAGGCAGGGGCTGAGGGGCCAACAGCAGAGCAAATCAACGAGCTGAAAACGAAGCTGAAGACGGAGTTTCGCTCACTGTGGATTGAGAAATACGAtcagctgaagaagaagaaagagcagCATGCCTCTGAGTGTTTGACCAAGCTGCTGGAGATGGCTACAGAGAGACACGCCAGTGAAATGAAGGCACTGAACagTGAAAGTAAAGCGGGGAAGAAGAAAGAATCAAAAAGCTCAGGTTCCGAGAAGAGCAGCTTGAAGAAGTGCAAGAGTAAGGAACAGCTTGACGATAATGACGATGCGCAGTCTGCATCTACCGATGGCATTTCATCACAGGAGCTGGAGCAGAAACTTAAGAAGAAACAGGCTGAAACTCTGGCTGGCATCAGAAGCGTGAACAGTCAGATGAACCAGCAGGCTGTATCAGAGCATGCTAAGAAGATGTGGTCTCTACCAGGTGATCTTAAGGAAGCAGTGAATGCCTGTGTGGGCGCTCACTTCCCGGAGCATGTAGATAAGACTGAAGGCACCAAGTCAGAGCAGGATGGCCAATATGGCCAAGTTTACCGGGGCTGATGTCCATTCAGCTTTCTCTCCTTAGCTCTCCTTATCACTTCTGCAGATGTAGTCGAAAGGTACACTTGAAATAGTTTGGAAAATCATTCTTCAGGAACTTAACAATGCTCATGTTTCAATCCACATGTTGATATAGTTTCTGAGTGAAATGGGTGCAATGTGCCAGAATTTCTCTCATGATATTTGTAGTAAAGCCACTGGCACCGTGGTTTAAAGAGATGTAAAAGAGACAATCACCTGCAGaactgtgctgttacagaaatgtGTCAGTTGTGATTTTAGGATGTATTGAATAGTTATTACAAAGGACATTGCTCTATGATCTTTATTTAGCACTTCCAGTTATTTATGGGAGCATTTTGGTATGTGTACATTTGGAACACATACAGAGAAATGTCTATGGTCTTCATTTAGTACATATAGAATACAATCTAATGTTACTTATTAAGGAGATAGAAGTGATGTCTCACTAATTACGAAAATAAACTTAATTAAA

Function

symbol description
plcb2 Is expressed in digestive system; oral cavity; and taste bud. Used to study congenital heart disease. Orthologous to human PLCB2 (phospholipase C beta 2).

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933767.2 True 5533 mRNA 0.44 32 19778568 19809259

Neighbor

gene id symbol gene type direction distance location
mthfd1b mthfd1,LOC108269612,LOC108232073 coding upstream 109021 19646283 ~ 19669547 (+)
LOC113538896 LOC108269628 coding upstream 148448 19620847 ~ 19630120 (+)
LOC113538831 LOC108269613,LOC108441832 coding upstream 286205 19477213 ~ 19492363 (+)
gcfc2 LOC108270421 coding upstream 303882 19460183 ~ 19474686 (+)
ywhaqb LOC108269934 coding upstream 321009 19449741 ~ 19457559 (+)
LOC113538872 ankrd63 coding downstream 27999 19837258 ~ 19839847 (+)
spint1a NA coding downstream 113874 19923133 ~ 19937793 (+)
LOC113538714 plekhg3,LOC108269610,LOC107560184,LOC107726575,LOC107660984,LOC108430640,LOC107678711 coding downstream 132652 19941911 ~ 19984241 (+)
xgb LOC108269631,LOC108430641 coding downstream 179225 19988484 ~ 20014894 (+)
dnajc17 dnajc17 coding downstream 452349 20261608 ~ 20313158 (+)
G168504 inafm2 non-coding upstream 3902 19772890 ~ 19774666 (+)
G168207 NA non-coding upstream 181601 19596423 ~ 19596967 (+)
G168175 NA non-coding upstream 253713 19523154 ~ 19524855 (+)
G168011 NA non-coding upstream 800092 18977016 ~ 18978476 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 936958 18839609 ~ 18841610 (+)
G168585 NA non-coding downstream 78668 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 178389 19987648 ~ 19987870 (+)
G168632 NA non-coding downstream 209502 20018761 ~ 20019038 (+)
G168633 NA non-coding downstream 209898 20019157 ~ 20020371 (+)
G168634 NA non-coding downstream 211375 20020634 ~ 20021068 (+)
LOC113538915 c9h15orf52 other upstream 11987 19722780 ~ 19766581 (+)
G168191 NA other upstream 90977 19674913 ~ 19687591 (+)
prlh2r LOC108269650,LOC108425589 other upstream 1200260 18569379 ~ 18578308 (+)
ldah ldah other upstream 1404488 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1855817 17867416 ~ 17922751 (+)
zfyve19 zfyve19 other downstream 70476 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 104084 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 233218 20042477 ~ 20042935 (+)
zbtb42 zbtb42,LOC106610857,LOC106582697 other downstream 333455 20142714 ~ 20148628 (+)
fsip1 fsip1 other downstream 555915 20365174 ~ 20453805 (+)

Expression


Co-expression Network