LOC113538599 (inafm2)



Basic Information


Item Value
gene id LOC113538599
gene name inafm2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19772800 ~ 19775087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026933769.2
TCCAGGGGGGCATGAGAAGGCTACAGCACAGCTTTGAGAAATTAACTGACAAGCTGAATCAGTTGGCCTGGAGCAGGGAAATCACTTACTACAGCCATATGCAGGACTGCAGTTTCTACACCTactttacagtaaattattCACGAGCTGAAGGCTGGATAAATTATGCACCGATCAATGAATGTCTGCATTTActcctcctttttttaaaatctgatgcTCGTTCTGGTTCTGTGGGAATCTAATTACACTTCGCGGCCAATCTTATATCTAAAGATCTAGCTCACATGCTCTTCAGCACCTGAGAATCATCGCCCCCATGCTCTCCTCAGTTAATATCCATTGGCTGTGTCATAGCCGTCTCTTTAAGAGCCCTCGCCCGCCCCCTCTGCTGTATTTTTAGCTGAGCAATGCTCTACAGATGCTGAACAGGACGAGCAGTGGTGCGTGTGCCATACATGATTACGCTTAAATCTGCACTTCTGTTCAATGATGCGTTCGCGCGCTTGATCTCTCCCTGGATATTCGCGCCTGCGGGAAACGGGCGGCTGGATgctccaggaaaaaaaacaaaacccgcTGGAGCCTGTGAGGAGAAGATGAGGTGTGCTGTCATGGATTTCTGAGAAGGCTTCGAGGAGCGGACATGGACGAAAATAAATTGCTCTAAGCTACAAAGCATCGAGCAGGCCCCAAAGCGTCCGGTGCGCCTCTCCGGTGCGTCTTTCTTACGTTTGGATTTAAAACGTCCCCCTCTTTCTTCGCGTCCCAGACCCTCCACACAGCCTTCAAGACGGACGGAGTGGTGGAGCACCGAGGCAAAAACCGGGCCAACATGCGGGAGAGGGACTTCATGCCCAACATGGAGCGGGGCAAGCCGGCCACGTACACGGGGGACAAGAAAGCCAAGATGGCCGCGAAGACTAACAAAAAGTGGGTCCGGCTGGCCACCGTGTTCGCCTACGTGCTCTCCGTGTCCCTGGCGGCGATCATCCTGGCCATTTATTACAGCCTAATATGGAAACCAACAAGCCATGGATCCGGAATGTTAGACGGGTCCACGGGAAACAACAACGCATTCATGAACGTCTCGACCAGCGTTAACAGCACGAGCGCCAATTTCACGCAAGCGGACAACGGCACGAGCGCAAATGGTACGCAAATAGACCTGGGCTTTAATGCGACCGGCGCCGGAAACGAGAGCGCGGCCGCAGAGATTGCGGGAACAGCGCGCTCCTACTCAGCCGCCATTGCATACACGCCTGCCAGCGATCAGATGAAACCAAACGCGTTTGGACTGTACGGATATGGTCAAAACTCGGGCAGCGGTACGAGTCCAAGTGACGCAAAACGCGAAAAGCGCGAGACGCTACCGGAGAATTCTGCGCGCTCTCGAACCGAGCCCAATGAACCGGAAAACAGAGGGCAAGAATGACCTAAACTGGTTAAAGCTTACACTTACAAACCGCACGCTTCCGTATAAGTGGTGTGCAAAAAGCAGTGCAGTTTCAGCATACTATTTAGTGCGGTAATGTGCGGTTTAGGACGTAGCCTAACTCAGTTTGGTGCATAGCGGCGCGCGCGCGCGGCTGCAGCTGACAGCTGAAGGATTCATGGAAAGATGGGAAGTATTCTGCGCTTGGTGCATGGACGCCAACTTGATTATGCTAACACACAGCAAAGACTtggttatatttttaaaacctttcCGTGTAACATAAACCGTCCAAAGTGTAATCTTTCATTTTAGGGCACATGGCACCTGTTTGATGGACACTAAATTCAAGACTGATTGGCATAACATCCAGCTTCCCAACTCACCTTTCTGTGCTTGCATAGTTTCCAAATGGTTTAGCCTGCCAGACGCATTTATTTGAACTGCAGCACGAAAATAATTAACAGCATCCCCATTTCTTTAGAATACTGATACTTTTTTTTGGaccagctattaaaatattgtaagaggaaaatattttacattgcATTTCACTGGAACAGTGTCCATATAGCCTCCCAATTAACCAGGATTCCTAAATCAGAGGAACCTGTGTCGAGTTCCGCTCAGGTATGtgcaaatattaatgtaaatgtattgtgtatttggtacatacatatatataaatgtacatagGTCACATGTAGGCTATTTGGTAAATGTATATAGTGCACACGCTCAGGCCTTGATCAAACTTTCGGCTACTTTTTACAAAAATCATGTATactagacacacacatacatatatatatatatacaccatcCCAAAGGCAAATAAAGGCCCTTATAAAAA

Function


symbol description
inafm2 Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026933769.2 True 2288 mRNA 0.48 1 19772800 19775087

Neighbor


gene id symbol gene type direction distance location
LOC113538986 LOC108269623,LOC108430634 coding downstream 129185 19629234 ~ 19643615 (-)
LOC113538672 LOC108269607 coding downstream 189550 19528667 ~ 19583250 (-)
LOC113538555 LOC108269630,LOC108441822 coding downstream 247932 19498748 ~ 19524868 (-)
grhl1 grhl1,LOC108269933 coding downstream 350875 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 380618 19388971 ~ 19392182 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 65284 19840371 ~ 19867165 (-)
bub1bb bub1b coding upstream 98335 19873422 ~ 19879335 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding upstream 116507 19891594 ~ 19908747 (-)
LOC113538610 pld4 coding upstream 244132 20019219 ~ 20025636 (-)
cep170b cep170b coding upstream 252206 20027293 ~ 20059002 (-)
G168493 NA non-coding downstream 5847 19766754 ~ 19766953 (-)
G168466 NA non-coding downstream 7073 19763846 ~ 19765727 (-)
LOC113538910 NA non-coding downstream 84691 19687231 ~ 19688109 (-)
LOC117598314 NA non-coding downstream 88654 19683239 ~ 19684146 (-)
LOC117598328 NA non-coding downstream 92131 19679497 ~ 19680669 (-)
G168608 NA non-coding upstream 112228 19887315 ~ 19887830 (-)
G168661 NA non-coding upstream 148018 19923105 ~ 19924187 (-)
G168665 NA non-coding upstream 164729 19939816 ~ 19940040 (-)
G168747 NA non-coding upstream 324040 20099127 ~ 20100572 (-)
G168750 NA non-coding upstream 331126 20106213 ~ 20106858 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 163022 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 177586 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 183898 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 806187 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 925104 18839615 ~ 18847696 (-)
srp14 srp14,LOC106610862 other upstream 238492 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 523424 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 547677 20322764 ~ 20330746 (-)
G169119 NA other upstream 789842 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 1038602 20813689 ~ 20817439 (-)

Expression



Co-expression Network