nt5c1ab (LOC108269929,LOC108425685,LOC106610886)


Basic Information

Item Value
gene id nt5c1ab
gene name LOC108269929,LOC108425685,LOC106610886
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15858730 ~ 15863628 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933793.2
aaaaataaatggcGTTTCATTACGAGCACAGAGCCACTGCAGAATGATGCCTGTTACAGACATGCTGGAGAGATTTGCTTCAGCAGTGTGCTGATTGAAGGAGGTGCCAGTGAGACGACTGACCTCTGATTCAGATAGAGAACAAGTATGCCTCGAGGAAGGAGTGAAAACACAGTCAGCCCTAGTAAATCTCCTCTGAGGCTAGGACTCGCTGTGGTTCGGATGAGATTACAGAAGCCAGGGGGTTTAGTCTGTGTGTCACGAAGTAGCAGCTACTGCAGAAATGAGTCTCCATGATGGACGAATGACCAGCAACGGTGACGCACGTTTGGGAGGCATGAAGGTGCAGGATCCCTCAACCCCAACGAAGAAACCTCAATCTCCCAAGCCTGAAAATGCCATCACCATTGCTGTGTCATCACGTGTCCTCTTCAACATGGACCTGGAACAGCAGATCTTTGAAGAGAAGGGCATGGAGGAGTACCTGAAGTACCAGATTGAACATGAGACTGAACCATTTGCACCAGGACCTGCTTTCCCCTTTATTAAGGCTCTGGAAGCAGTCAATGTGCAGCTCAGACAACTTTATCCAGACAGCGAAGAGCTCTTTGATGTTGTGCTGATGACTAACCATCACGCAAATGTCGGACTCAGACTCATTAACTCGATCAACCATCACAAGCTATTCATTGAGCGCTTCTGTATGACTGGAGGTAATAGTCCAATTGGGTATCTGAAAGCCTACCACACCAACCTGTACTTGTCTGCTGATTCAAAGAAAGTGATAGAGGCCTTAGAGGAAGGGATTGCGGCAGCCACCATGTTCAAACCAGAGAAAGTGACGGAGGTGTCAGAGACACAGCTGCGAGTGGCCTTCGATGGAGACGCAGTGCTGTTTTCAGACGAGTCGGAGAGAATCTTTAAAACGCAAGGACTGGACAAATTTTTTGAACATGAAAAGGCCCATGAAAACAAGCCGCTTGATCATGGTCCACTGAAAGGATTTTTGGAGGCTTTGGGAAAACTGCAAAAGAAATTCTCTGCCAAAGGTCAGCGTATGGACTGTCCCATCCGCACCTACCTTGTGACTGCTCGCAGTGCAGCTAGTTCAGGTACACGTGCCCTGAAGACCCTGCGTTCTTGGGGCCTAGAGACAGATGAAGCCCTTTTCTTGGCTGGAGCACCTAAAGGCCCTATGCTGGCAAAAATCAAGCCCCACATTTTCTTCGATGATCAAATGTTCCATATTGAAGGGGCTGCAGAGCTGGGAACTGTGGCGGCTCACGTTCCCTATGGAGTTGCCCAAAAAGTGCCATCAAAGAAATCAAATGACAAAAGTGaggtttaataaaataaaataaaataaacagcatttcTTACTGGCATGAAATATGTATTGTGTTGacaatatttgtttttagaGATTGGTGCCTGCATTGAATGTTCATCAGAGTGACATCTTGTACTGTACTAAGATTGTCTAgaatttaatatatacagtacctaGATTATACTTCAGCTGTGTTAGTAAACCGAAATCTGTGAAATCAGGTGAAGCTAAAGATCAAGAGGGTCAAGCCATATATATCTTGCTGGCTGATTAAATAGAGTGAATTTAATACAGCAAGGCATTGTAatggatgtactgtatgtgcctTTCAGGTACTACACAattgtctgaaaaaaaaa
>XM_034307845.1
CCAGACACTCTTGATAATGTCTCATAAATTTAGCTCTACTTACTGCAGGATGCAGAACAGATGCAGCACTGCACCTctcacaaacaccaacacaaacacagcacgCTGCACTGCACAGCAACAGGCACAGGAGCAGAGAGCTGGAGCAATGAGAAGCTGCTAATCATGCCGGAAATGCTGTTAGAAACCTGGACATTAATAACAAGCGAAGAAAGCGCCGAGCTCTTGACGCTATGACGCGGCCGAATGGGACTGAGATTTAGCTAGACTACGACAATacgtgctgttgttgttattgttgttgttgttattattattattattatgattcaAAATCCGTCGTCAGTATAAGAAACGGCTCTGTCGCAGTAAAGTCAaccggcacacacacactgctctggtGGATAAAATGGGCTCTGAGAATCAAAACGTGGAAACGATCGTGCTCTGTCCCAAGCCTGAAAATGCCATCACCATTGCTGTGTCATCACGTGTCCTCTTCAACATGGACCTGGAACAGCAGATCTTTGAAGAGAAGGGCATGGAGGAGTACCTGAAGTACCAGATTGAACATGAGACTGAACCATTTGCACCAGGACCTGCTTTCCCCTTTATTAAGGCTCTGGAAGCAGTCAATGTGCAGCTCAGACAACTTTATCCAGACAGCGAAGAGCTCTTTGATGTTGTGCTGATGACTAACCATCACGCAAATGTCGGACTCAGACTCATTAACTCGATCAACCATCACAAGCTATTCATTGAGCGCTTCTGTATGACTGGAGGTAATAGTCCAATTGGGTATCTGAAAGCCTACCACACCAACCTGTACTTGTCTGCTGATTCAAAGAAAGTGATAGAGGCCTTAGAGGAAGGGATTGCGGCAGCCACCATGTTCAAACCAGAGAAAGTGACGGAGGTGTCAGAGACACAGCTGCGAGTGGCCTTCGATGGAGACGCAGTGCTGTTTTCAGACGAGTCGGAGAGAATCTTTAAAACGCAAGGACTGGACAAATTTTTTGAACATGAAAAGGCCCATGAAAACAAGCCGCTTGATCATGGTCCACTGAAAGGATTTTTGGAGGCTTTGGGAAAACTGCAAAAGAAATTCTCTGCCAAAGGTCAGCGTATGGACTGTCCCATCCGCACCTACCTTGTGACTGCTCGCAGTGCAGCTAGTTCAGGTACACGTGCCCTGAAGACCCTGCGTTCTTGGGGCCTAGAGACAGATGAAGCCCTTTTCTTGGCTGGAGCACCTAAAGGCCCTATGCTGGCAAAAATCAAGCCCCACATTTTCTTCGATGATCAAATGTTCCATATTGAAGGGGCTGCAGAGCTGGGAACTGTGGCGGCTCACGTTCCCTATGGAGTTGCCCAAAAAGTGCCATCAAAGAAATCAAATGACAAAAGTGaggtttaataaaataaaataaaataaacagcatttcTTACTGGCATGAAATATGTATTGTGTTGacaatatttgtttttagaGATTGGTGCCTGCATTGAATGTTCATCAGAGTGACATCTTGTACTGTACTAAGATTGTCTAgaatttaatatatacagtacctaGATTATACTTCAGCTGTGTTAGTAAACCGAAATCTGTGAAATCAGGTGAAGCTAAAGATCAAGAGGGTCAAGCCATATATATCTTGCTGGCTGATTAAATAGAGTGAATTTAATACAGCAAGGCATTGTAatggatgtactgtatgtgcctTTCAGGTACTACACAattgtctgaaaaaaaaa

Function

GO: NA

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933793.2 False 1689 mRNA 0.45 7 15858730 15863628
XM_034307845.1 True 1758 mRNA 0.44 6 15858730 15862925

Neighbor

gene id symbol gene type direction distance location
si:dkey-21a6.5 NA coding downstream 3547 15848037 ~ 15855183 (-)
mrpl35 mrpl35 coding downstream 11355 15843470 ~ 15847375 (-)
hspa4l hspa4l,LOC107586823,LOC107561683,LOC107718856 coding downstream 34765 15811342 ~ 15823965 (-)
plk4 plk4,LOC107718857,LOC107561682,LOC107664465,LOC107586821,LOC107703461 coding downstream 49897 15802239 ~ 15808833 (-)
itpk1b itpk1,itpk1b,LOC108435758,LOC107561681,LOC107664466,LOC107703450 coding downstream 59066 15763858 ~ 15799664 (-)
zfyve28 zfyve28 coding upstream 492 15864120 ~ 15878344 (-)
rtkn2a LOC108269925 coding upstream 19770 15883398 ~ 15889538 (-)
egr2a egr2a,LOC108269483 coding upstream 42729 15906357 ~ 15914710 (-)
jmjd1ca LOC108270245 coding upstream 54173 15917801 ~ 15981784 (-)
ahsa1b ahsa1,LOC108425677,LOC107732084 coding upstream 123458 15987086 ~ 15992896 (-)
G166289 NA non-coding downstream 12475 15664486 ~ 15846255 (-)
G166286 NA non-coding downstream 251208 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 367722 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 612821 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 613267 15244866 ~ 15245463 (-)
G166319 NA non-coding upstream 32039 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 69529 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 136591 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 403601 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 581213 16444841 ~ 16446005 (-)
eml5 eml5,LOC108435760 other downstream 96012 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 195235 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 536679 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 741366 15107120 ~ 15117364 (-)
nenf nenf other downstream 776525 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 1009651 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1303240 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1752110 17615738 ~ 17624534 (-)
G167566 apob other upstream 2442115 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2511775 18375403 ~ 18382455 (-)

Expression


Co-expression Network