LOC113538610 (pld4)


Basic Information

Item Value
gene id LOC113538610
gene name pld4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20019219 ~ 20025636 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933801.2
TGAAAAGCAGAACTGAAAAGAGGAAGAGTAACTAGAGGCTCTGGTGGCTTTAAATACTACACTTGCTTGTGACTGATTTGCAGAAAAGGAAAGGCACGCCAGACCTCTGCTGTTACCATGTACTCATCATGTAGATCTACGTTTGAAGAGGTCCATGAATTGTCCTCTCCGTACACATCTTTACATGACAGTTATGTTCCCAAAAAGCGGGGCTTGAGTGGACTTAAAACATTACTGTTGGCCACAGGATGTTTGATTATCCTAGGGGGCCTCCTCGCCATTGCTTTGCTAGAGGAGAtgaaaaatgaggaaaagaTTAACAATGCTGTGATTCAGAACACCACGCATCAGCCAGAGCCACATGCTGAACAATGTGATCATGTTAAAGAATGCAGGATTGTTCTGGTTGAGAGTATTCCTTTATGGATGGACTATGGAACCAATGCCACTTTTGGAGTACCACTGTACAAGGCATGGAAAGACCTTCTGTCTATAGCGACCGAGCAAATCGATATAGCATCATTCTATTGGTCTCTTACTGCTGAGGACATCGGTGTCAAGTCCTCCACTGACCAGTTTGGTAGAGACCTACTGGAACAATTAAAAGCTCTGCCGAAAAGAAACGTGTCTGTGAGAGCTGTGAGCAGCATCCCTTCTGTGGCAACCAATTCGACAGACCTGGATGTGCTGAGAGAAAATGGAGTGCAGGTCAGACGTATTAACTTTGGCAAATTGACTCGAGGAATTCTTCACAGTAAGTTCTGGATTGTGGACAGGAGACATATCTACATCGGCAGTGCCAACATGGACTGGAGAGCATTAACACAGgtgaaggagcttgGAGTCGTGATTTACAACTGCACCAGTCTGGCCACAGACCTCCATAAGATCTACCAATCCTACTGGGTTATGGGTCACAAAAATGCTACGATCCCAGTTCCCTGGCCCTCTTCTTACGACACATCCATTAATAAAGACCAGCCTCTTCGTGTGAACCTTAGCGATGTGCCCAGTAGAGTTTACATTGCGAATTCCCCTCCTGCCTTCTGTCCGGACTCGCGCACCAAAGACCTGGATGCAGTTTTGTCCGTGGTCAGCCAGGCAGAGCAGTTCATTCATGTGGCAGTTATGGAATATTTTCCTGCCTCCAAGTTTTACTACAATCACAGgtACTGGCCAGTTATTGAAAATGCACTAATACGGTCAGTGTTTGAGAGGAACGTTACAGTGCGTCTCCTGATCAGCTGTGGCCGTGACAGTGACTCCTCCGTACTCCCCTTCCTCAAGTCCCTCAATGCCCTCAATTCAGCACCTGACAACATCAGGATAGAAGTGAGACTCTACATTGTTCCAGTGGGTAACGAGACTAACATTCCCTATACAAGAGTAAATCACAACAAATATATGGTTACAGATAACGTGGCATACATAGGTACCTCTAACTGGTCTGCTGACTACTTCAACACCACTGCTGGTGTCGGGTTGGTGGTTTCCCAAGATGTTTTGCATTCTCCCTCACCTGGAGACACGTTACTGGGGCAGCTGAGTGCTGTGTTTGACCGAGACTGGGGCTCCAAATTTGCAGTGCCACTAGAAAAACTGGGCCACAACCCTGACTGTGCTTTTTCTAAAGCATAAATGGACAGTATCAATTCACACAGTATAAAGAGGTTTTATTACACaagctgaaatgaaatgtaatgcaAAATTGAAATGCTGCACATTATATAATGCTTGTCCATGAGTTACATGCTATGGGGTAATTAACTTTCTGTGATCAGCATTATAATAACAGTCCTTTTCACTCTAGTAAGAAAGGATGGGGAGAGAACTGACACACAGTTAAGCATCAAAGTGAACAGGCTTAATAGCAGCCTGGATTGAACAAAGCAATAGACATTtatagagaaaagaaaataaatgaagattgCGATACATGTAAcctggaaaataataaatatcactgctgtcaaaatttaaaaccagtggttctcaaagtggggtccgtGAAGCAGAGTCAGGGggactgtgattttttttttttttttttttttttttttttttaaatatagtggTAGAAATCAAaccccaccattatcaaagctgctgtagtatttattattcagttcttATATTCATCTATTTGACTAGTCACTTGTCGTCTTGGACTTAATATGCTCTGTCTGTAAAAAGATCatctattaaaaaacaaaacaaaaccaaaaaaaactcAGTGCCTCCAATAATTAGCCAGAATATtactgtttcattcattcatctcctgTAAGCACTTTGTGGATCCGGCACCCGGGAACACTTAGCACAAAgttcgttctctctctctttctctctctctatcacactctctcactcactcattc

Function

symbol description
pld4 Predicted to enable single-stranded DNA 5'-3' exodeoxyribonuclease activity. Predicted to be involved in hematopoietic progenitor cell differentiation; phagocytosis; and regulation of cytokine production involved in inflammatory response. Predicted to be located in early endosome and endoplasmic reticulum membrane. Predicted to be active in several cellular components, including endoplasmic reticulum; phagocytic vesicle; and trans-Golgi network membrane.

GO: NA

KEGG:

id description
K16860 PLD3_4; phospholipase D3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933801.2 True 2381 mRNA 0.43 11 20019219 20025636

Neighbor

gene id symbol gene type direction distance location
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding downstream 110472 19891594 ~ 19908747 (-)
bub1bb bub1b coding downstream 139884 19873422 ~ 19879335 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding downstream 152054 19840371 ~ 19867165 (-)
LOC113538599 inafm2 coding downstream 244132 19772800 ~ 19775087 (-)
LOC113538986 LOC108269623,LOC108430634 coding downstream 375604 19629234 ~ 19643615 (-)
cep170b cep170b coding upstream 1657 20027293 ~ 20059002 (-)
akt1 akt1,LOC107716055,LOC107703621 coding upstream 40084 20065720 ~ 20126339 (-)
siva1 siva1 coding upstream 143494 20169130 ~ 20174078 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding upstream 176483 20202119 ~ 20212962 (-)
inf2 inf2,LOC107745357,LOC107678755 coding upstream 194238 20219874 ~ 20255875 (-)
G168665 NA non-coding downstream 79179 19939816 ~ 19940040 (-)
G168661 NA non-coding downstream 95032 19923105 ~ 19924187 (-)
G168608 NA non-coding downstream 131389 19887315 ~ 19887830 (-)
G168493 NA non-coding downstream 252266 19766754 ~ 19766953 (-)
G168466 NA non-coding downstream 253492 19763846 ~ 19765727 (-)
G168747 NA non-coding upstream 73491 20099127 ~ 20100572 (-)
G168750 NA non-coding upstream 80577 20106213 ~ 20106858 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding upstream 119631 20145267 ~ 20148736 (-)
G168758 NA non-coding upstream 123854 20149490 ~ 20149902 (-)
G168759 NA non-coding upstream 124657 20150293 ~ 20151303 (-)
srp14 srp14,LOC106610862 other downstream 502 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 409441 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 424005 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 430317 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 1052606 18961708 ~ 18966613 (-)
LOC113529462 LOC108269960 other upstream 272875 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 297128 20322764 ~ 20330746 (-)
G169119 NA other upstream 539293 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 788053 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 1062667 21088303 ~ 21119625 (-)

Expression


Co-expression Network