bub1bb (bub1b)


Basic Information

Item Value
gene id bub1bb
gene name bub1b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19873422 ~ 19879335 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933817.2
GAACAGAATTTACCCAATCAGCGCGCTGTCAGTCTCCTCCCAGTTTTCATTCAAatatacacagagacagaagaacAGACGTTCAGAAGAGCCTGCAACgGCAGAAGAGTCCTCTGATTAGCCAGCTAGCACTGGAGAGCTTCTTTTAACTCAGTGCCTGCTGGTAGTTACAGTCAGTCACTGATAGTGCAGTCCACTGCCGTCAGTTAACAATggcagagggagagggagaggtggAGTGGGAGTTATGCAAAGAGAATATCCAGCCTCTGAGACGTGGCCGAGCCATCTCTGCCCTGCATCAAGCCCTCAGCCAGCAGCAAGAGGGCACCTCTAGTGCCATCAACCAACAAAAACAaGCATACGAGTTAGAGCTTCGGATGTACGATGGAGATGACCCTCTTGACGTCTGGGATAGGTACATAAAATGGATAGAACAGACTTACCCACAGGGTGGTAAGGAGAGCGGTTTGACTGTTCTTCTGGAGCGAGCAGTCATGAAGTTTacggaagaaaaaaaatatcacaacgATTCCCGTTATGTTGACCTTTGGATCAAATTTACAGAAACTTGTTCTGATCCGCTGGATGTCTACCGGTACATGCAAGCTCAGGGAATAGGGACAATGCAGGCATCTTTTTACATTGCATGGTCTGAAGAGTATGAAAAAAGGGGAAACTCGCGGATGGCCGACAGCATATTCCAAGAAGGTTTAAAGTGTGGGGCTGAACCTCTAGACAGATTACAGCAATTTCACAAGGCCTTACAGGCACGAGTGTGTAGGCAGATGATGACATCAATGAATGATCAGGAAGCAGATGATGAGCTTTCAGAGCCTCAGAGGGCTTCACTCGCAGAGCTGAAAGccaagggaaagaaaaaagctgTTGCTCCTATCAGTAGGGTGACTGGAACTGTTGGCTATGTCAGGGGTCTGCAGTTTAAACAACCAGTTGGGCCAAGTCACAACAGTAGACTTGTGATATTTGATGAGAATAAGGAGGACTCTGAGCCTCAGGAACTCAAATTAGAAAGTTGGGCAGCCCCTCCAACTGCTAAGGCCAAGGAGAATGAACAGAGACCTGATAAATGGACTAATGCTAAGTTGCCGCAGAAGTCCAGGTTTGGCCACAGTGTCGTCGCTCCGCCTCCAAAACCAACTTTCCAGCCCTTTGTGGAGGAGAGTGATCAGCCTCCTGTGGTAACTCCATGTAAGCTCAACCCAGCAGTGAACACTGTACTTTCAGCGAGGAAGCCGTGTCGTGAGGAGCAAACGCCACTGAAGAGGCTACAAGAGAGGCAGCAGCACATGCAGGTCCAGCAGGAAGATGAGGACAAAAGTGGAGAGAAGAGCATGTACTGCAAGGAGCTGCTGTTCAGCGGTGTCACTGAATTTTCCTTTGAAGAGCTGCGTGCTGAGCGATACCGCCAGAAATGCAGCCAGAGACTGGAAGCTGCCAGCAGTGAAGCAAACAGTAAAGAAGAACCACACACTAGTCAAAACGACTGACAAGAGCAAGCAGTCATGTCAATGATCTAGACTCTAAATGAGCCTCTATAGTCAGTGTTGGTTTTTATGTTAGTTCTCTTGTTGTACCTAAAGAAATAGAACCTGAGAAGTCTTGCAAAAAGTATTGATAGCTGTTCTGTGATTGAACGTGGGTAATATCAGTACCTGAGATCTTCTCATTCAAATATACTCTTTATACTGATGCTTGACTGCTGACCATCCCAGGATTCTACTTCTACAGTTGTACTTATCCATGTGATtttgtacatgtatatatattttttataaaaccaCTATCACTATCTTGATCTTGAAAATGTTGTACTAGCAATTATGTAGAAGTATGGTGTATCcaatgtaaactttttatataaatagcTACTGCAGCTTTTGGGCATATTGACCCTGATACTGTATGACATACACCTTTGGTAACTCATTGGAAGAACCACGtagtttaataaacacatgcaGTTTTTTCA

Function

symbol description
bub1b Predicted to enable protein kinase activity. Predicted to be involved in meiotic sister chromatid cohesion, centromeric and mitotic spindle assembly checkpoint signaling. Predicted to act upstream of or within metaphase/anaphase transition of mitotic cell cycle and protein localization to chromosome, centromeric region. Located in cytosol; perinuclear region of cytoplasm; and spindle. Part of outer kinetochore. Colocalizes with kinetochore. Implicated in colorectal cancer and mosaic variegated aneuploidy syndrome 1. Biomarker of gallbladder cancer; pancreatic cancer; and tongue carcinoma.

NR:

description
mitotic checkpoint serine/threonine-protein kinase BUB1 beta-like

GO: NA

KEGG:

id description
K06637 BUB1B, BUBR1, MAD3L; mitotic checkpoint serine/threonine-protein kinase BUB1 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933817.2 True 1993 mRNA 0.45 10 19873422 19879335

Neighbor

gene id symbol gene type direction distance location
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding downstream 6257 19840371 ~ 19867165 (-)
LOC113538599 inafm2 coding downstream 98335 19772800 ~ 19775087 (-)
LOC113538986 LOC108269623,LOC108430634 coding downstream 229807 19629234 ~ 19643615 (-)
LOC113538672 LOC108269607 coding downstream 290172 19528667 ~ 19583250 (-)
LOC113538555 LOC108269630,LOC108441822 coding downstream 348554 19498748 ~ 19524868 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding upstream 12259 19891594 ~ 19908747 (-)
LOC113538610 pld4 coding upstream 139884 20019219 ~ 20025636 (-)
cep170b cep170b coding upstream 147958 20027293 ~ 20059002 (-)
akt1 akt1,LOC107716055,LOC107703621 coding upstream 186385 20065720 ~ 20126339 (-)
siva1 siva1 coding upstream 289795 20169130 ~ 20174078 (-)
G168493 NA non-coding downstream 106469 19766754 ~ 19766953 (-)
G168466 NA non-coding downstream 107695 19763846 ~ 19765727 (-)
LOC113538910 NA non-coding downstream 185313 19687231 ~ 19688109 (-)
LOC117598314 NA non-coding downstream 189276 19683239 ~ 19684146 (-)
LOC117598328 NA non-coding downstream 192753 19679497 ~ 19680669 (-)
G168608 NA non-coding upstream 7980 19887315 ~ 19887830 (-)
G168661 NA non-coding upstream 43770 19923105 ~ 19924187 (-)
G168665 NA non-coding upstream 60481 19939816 ~ 19940040 (-)
G168747 NA non-coding upstream 219792 20099127 ~ 20100572 (-)
G168750 NA non-coding upstream 226878 20106213 ~ 20106858 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 263644 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 278208 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 284520 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 906809 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 1025726 18839615 ~ 18847696 (-)
srp14 srp14,LOC106610862 other upstream 134244 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 419176 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 443429 20322764 ~ 20330746 (-)
G169119 NA other upstream 685594 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 934354 20813689 ~ 20817439 (-)

Expression


Co-expression Network