tmem229b (tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331)


Basic Information

Item Value
gene id tmem229b
gene name tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16761588 ~ 16775576 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933818.2
TTCTGGAACTAAGATTTTGAAGAACTTTGAGATGGATCTTCAAGTAGAAATGGTTTTATCCAGAACTATTGACCATCcaaaggaacattttttttctctgagtgtACAGGACTAGGCTAcattttgtgattaaaaaaaaaaaaaatagggctGATGAATCCTTATTTTAATTTACGGGTCATCTGAATGCCTTTCTAGCCCAACTGGGGAAAATGACCTTTAaccttgagtgtgtgtgctgtagagtgcagtgcagtgttgaggagaggaggagaggagagcgCCAGCAGTGAAACAGTTAACTCTGAGCACAGCTCGGTAGTGTCGGACGCCGGAGCGCGGCTCTGAGCATGTGCTGTTCCTGCTGCAGTGAAGGAAAATGTGTCAGTTATCATTGGAGAGGAGTATaagggaggagagagggagagggaggttAGCCGGGGCAAACACACGACGAGAAGGACCCGATACGACGATGTTCCTGTTTGGTCTCTTGTCCTCTGCATGATTACAATGAACTGGCAGAGGGTCGATCCCGCACGCGCTGCAGCCCGACAATAAAGCACGCAAAAACCCCAGAGTTCTGAACGGACCAAGCGGCCcagtcaccatggcaacagcaaTGACTCCCGAGCCCCTGACGCCGCTGTCACGGTGGTATCTGTATGCCATCCATGGCTACTTCTGTGAAGTCATGTTCACAGCGGCATGGGAGTTCGTGGTCAATTGCAACTGGAAGTTCCCTGGTGTGACGAGTGTGTGGGCGCTCTTTATCTATGGAACCTGCATCCTGATTGTTGAGCGCATGTACCTGCGCCTGCGTGATCGCTGCAATGTCTTGCTGCGCTGCCTCATATACACCCTGTGGACGTACATGTGGGAGTTTGGCACAGGGCTGCTCCTGCGTCAGTTTGATGCCTGCCCTTGGGACTACTCACAGTTCAAGTACAACTTTATGGGCCTGATCACGGCTGAATATGCCGTGCCCTGGTTCTGTGCATCATTCATTGTGGAGCGTCTAGTCATTCGCAACACACTGCGGCTGCGCTTTGATGAGTGGGCAGAGCCTGGCCAGGTTGGAGGAAGTGgtggaggagaaagaggaggaggaaggagaggaagaggaaccAGAGGAGTGGCCACCAATGCCAATGGCTATGTGAAAGTGGACTGAGTGAGAGTTGTCATTTCCCTCTCCgtctttaaatatgtatttgcccagtcttttcttttctcctgaAGATGTTTCCAGCTTTCTCCTAGCCCACTAtctgggagagagagatgttaaGATTCAGTTGGTGTGGATCAGTGAAAAAAAACTCCTAAAAAAACCCAAGAAAACCACAGCTGGAATAAGGCGTGTGGTTTTAGTGCGCCACAGAGGAGAACTGCAGTCTGTCCACTAGTGTCCAAATTCTGATATGCTTCATTCAGGCATCCCCTAGCAGCCCATTAGCCCAGGGAAGATACAGAGGATTTTATTGTGTAGCTTGTATTGTTTACCCGTCTCTGTATGTACCTCCCAGACCAGTCCATCCACTTCAAAAACAGTGGGAGGGATAAAGAGCAGGAAAAGAACATAAGAACTTCTGTTTCATTAAGGATATTCCATcctgaaatacagaaaaatggaccagaaaataaaaaatgctataaaaaaatcaatattttttagCATATTAAAGTTAAGTGTGTAGTAGCAAAAGCAAATAACTGTTAGGATAAAGAATTTTAATTGTTGaagtttgtgttatttattaatatttatctaaGGGTAGTTAAGTAACTTATTACAGGCTTATAATATGTTGTATTCTGTGCCCTAAAGTAATGCATTGAACTTGAATCTAGTGTTTTTATACGGTACAAAAAAGAATGCTTGAAAATGCATGAGAATAGTGTCTTCCAGTTTTTTTAACAAGAGGCAAATCTGAAATGTATTCCGTAAAAagaactgtgtttatttttaaccatATGGATTAAGACACAAGGGCGTACTGTATTGTATTCACTTATACTGCTGACAGTTAGGATTTAAATATGAGATGTCTTAAAATATTGTGTGAATATACTGAAAAGAGTGTTGAGagaagtgggaaaaaaacatgaactgcTGCTATGTTCTCTCGTTGTCCAGAATATCTCTGTATTAATTAAAAGTGACCAGGCCTTGTGCACTACAGccccttaaaataaaaaaggttttctAGGTTCTAGAATGAAAAGTCCAAACTTGAtcataacaaacaaacaaacaaactgccTTAAACTCATTTTTGTACATTGATTAACAAGTTAGTGcatgttaaattattatataataacatttttattgtattgaaaTAGATGATGATCTTGTATCAAAATCCAGAATATCCCATCTgttcaataaatacaaataatacattttactgAAAGCACCA

Function

symbol description
tmem229b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cranial ganglion; epiphysis; hatching gland; hindbrain; and neurons. Orthologous to human TMEM229B (transmembrane protein 229B).

NR:

description
transmembrane protein 229B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933818.2 True 2426 mRNA 0.42 2 16761588 16775576

Neighbor

gene id symbol gene type direction distance location
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding downstream 104218 16626955 ~ 16657370 (-)
slc25a21 slc25a21,LOC107679800 coding downstream 141187 16540840 ~ 16620401 (-)
nkx2.9 nkx2-8 coding downstream 246408 16513235 ~ 16515180 (-)
nkx2.1 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 253073 16505893 ~ 16508515 (-)
mbip mbip coding downstream 270543 16479179 ~ 16491045 (-)
mta1 mta1,LOC107679789,LOC107666257 coding upstream 1127 16776703 ~ 16811216 (-)
tmem62 tmem62,LOC103132791 coding upstream 132146 16907722 ~ 16922047 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding upstream 153269 16928845 ~ 16937439 (-)
slc30a1b LOC108269644,LOC105895753 coding upstream 165051 16940627 ~ 16953297 (-)
impg1b LOC108270397 coding upstream 359902 17135478 ~ 17155642 (-)
G166865 NA non-coding downstream 16766 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 315583 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 494073 16267229 ~ 16267515 (-)
G166390 NA non-coding downstream 761076 16000219 ~ 16000512 (-)
G166380 NA non-coding downstream 828151 15933157 ~ 15933437 (-)
LOC113538645 NA non-coding upstream 63505 16839081 ~ 16865427 (-)
G166967 NA non-coding upstream 149700 16925276 ~ 16928196 (-)
G167011 NA non-coding upstream 191880 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 276908 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 301406 17076982 ~ 17088776 (-)
eml5 eml5,LOC108435760 other downstream 998870 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1098093 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1439537 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1644224 15107120 ~ 15117364 (-)
nenf nenf other downstream 1679383 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 97703 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 391292 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 840162 17615738 ~ 17624534 (-)
G167566 apob other upstream 1530167 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1599827 18375403 ~ 18382455 (-)

Expression


Co-expression Network